PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M01101.1.p
Common NameMIMGU_mgv1a020467mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NAC
Protein Properties Length: 305aa    MW: 34346.4 Da    PI: 8.0384
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M01101.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.61.5e-33652061128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 
                       lp+G++F+P+d+e++ ++L++kv  +       +   +    +i+   +i++++P++Lp  v++e +  +fF++ +k+y+tg+rk+r+++   
  Migut.M01101.1.p  65 LPAGVKFDPSDQEIL-QHLEAKVLCDAeklhplI---DkfipTIEGDnGICYTHPEKLP-GVNKEGQVRHFFHRPSKAYTTGTRKRRKVHaea 152
                       799***********9.99****988875665442...232223554446**********.666777888******************744455 PP

               NAM  80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                          + +W++tgk+++v ++ ++  g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Migut.M01101.1.p 153 dgsETRWHKTGKTRPVSTHCNNIRGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 206
                       555778***************************66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-3658225IPR003441NAC domain
PROSITE profilePS5100533.33465225IPR003441NAC domain
PfamPF023657.3E-1566206IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MTMNDNSREE EEDMLSLQIV SKENCRIGQQ HNTSSSSSSI ICPSCGKTVI LHDHNQTGLQ  60
DLPGLPAGVK FDPSDQEILQ HLEAKVLCDA EKLHPLIDKF IPTIEGDNGI CYTHPEKLPG  120
VNKEGQVRHF FHRPSKAYTT GTRKRRKVHA EADGSETRWH KTGKTRPVST HCNNIRGYKK  180
ILVLYTNYGR QRKPEKTNWV MHQYHLGDNE EEKEGELVVS KVFYQTQPRQ CGSSNIVKEA  240
IIDRSCFEKT AGFVGYYNNN NNPSFISYNE EGQNTNKDRA STMIPNLVDG SSFIHLPSNA  300
SKGK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M01101.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012848850.10.0PREDICTED: NAC domain-containing protein 73-like
RefseqXP_012848851.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-110NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A022QL950.0A0A022QL95_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.M01101.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-111NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]