PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M01107.2.p
Common NameMIMGU_mgv1a000125mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HB-other
Protein Properties Length: 1295aa    MW: 144942 Da    PI: 6.1197
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M01107.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.9e-192379157
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                      r kR+  t+ qle+Le+ + +++yps+++r+eL+ klgLt+rq ++WF+ rR k+kk
  Migut.M01107.2.p 23 RPKRQMKTPFQLEVLEKTYSMEMYPSEATRAELSVKLGLTDRQLQMWFCHRRLKDKK 79
                      579****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-191180IPR009057Homeodomain-like
SuperFamilySSF466897.7E-181180IPR009057Homeodomain-like
PROSITE profilePS5007116.6822080IPR001356Homeobox domain
SMARTSM003892.4E-182284IPR001356Homeobox domain
PfamPF000461.2E-162379IPR001356Homeobox domain
CDDcd000867.49E-152381No hitNo description
SMARTSM005711.0E-19506565IPR018501DDT domain
PROSITE profilePS5082716.451506565IPR018501DDT domain
PfamPF027911.4E-17507562IPR018501DDT domain
PfamPF050661.3E-13686753IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.0E-9866909IPR028942WHIM1 domain
PfamPF156134.7E-1410331105IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1295 aa     Download sequence    Send to blast
MEAGSDGEIN RNMNQSPAGG SKRPKRQMKT PFQLEVLEKT YSMEMYPSEA TRAELSVKLG  60
LTDRQLQMWF CHRRLKDKKE SVVGAAIKPH NPASVGKKRL TESPREELMT VEPVSGHHAS  120
GSGSASGSGS GSGSSQFDNG DDQPMAPTRY YESPRTIMER RVIACVEAQL GEPLRENGPI  180
LGVEFDELPP GAFGAPIVQR EQQDRYRHSY DSKLYGQYDS KHIKAASTGP HEAVESKIRI  240
DAYGHVAASY PYESPVDGHT SKSSSHMHGN GHLPREYGTE GQVSSMDIYS QPGRQMQFPS  300
PINTDFTTQN DNNLHMGRKR KTDEARIGKE VQAHEKKIRK ELEKQDLLRR KREEQMRKEM  360
ERQDRERKKE EQRMMREQQR QEEKFQREER REMERREKFL QKELLRAERK KQKDERLREK  420
EAARQKAAME RATARKIAKE STELIEDERL ELMELAAASK GLASILSLDY DTSQNLESFR  480
EALCEFPPKS VQLRRPFGFQ PWIDSEENVG NLLMVWKFCM TFADVLGLWP FTIDEFIQAL  540
HDYESRLLAE IHITILKLIV KDIEDVVRTP SGGPGTNQYS AINPEGGHPH IVEGAYLWGF  600
DIRNWQKHLN SLTWPEILRQ FALSAGLGPK LKKKGIDKVS ANDESKGCEE IVSTLRNGSA  660
AESAVAIMQE KGFSLQRKSR HRLTPGTVKF AAYHVLALEG SKGLNVIELA EKIQKSGLRD  720
LTTSKTPEAS ISVALSRDPI LFERIAPSTY CVRPAFRKDP ADAESVIAAA KDKIQRYANG  780
FLSGQNADEE ERDDDSDSDV ADGAEADAIA LSLDANKDGE CNELDSCSGD GKDKVPAADD  840
LQNGISTPGF GESNPDQGTE IDESKSGEPW VQGLTEGEYC DLSVEERLNA LVALIGVANE  900
GNSIRVILEE RMDTANALKK QMWAEAQLDK RRMREEIVSK YYDFSFGSVP EGGLSPLVVA  960
ENKIYDPTVT TLGKDYPSAV AEGIHNSVDN RAQDTTMDQF IPPPQQNGHT TERSRLQLKS  1020
YIGHRAEELY VYRSLPLGQD RRRNRYWQFV ASASCLDPGS GRIFVESPNG NWKLIDSEET  1080
FDTLLASLDT RGARESHLHI MLQKIEVSFK ECVQRNYRSF SDILDHNRNK GGQEAGGVTS  1140
SLGCGSVESP SSAVCSSNSD ILEPSVSFRI DFGRSGIEKK NLLKRYEDLQ TWTWKECLNS  1200
STVRALAYGK KRCSQLLGIC DVCLAFYDPK EDICPSCHQI HGNVGPKGNP PEQFTGEKSI  1260
TDGTDIIMSN SSPPRIRLIK AIVALLEVCL ITLP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17279RRLKDKKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M01107.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012848733.10.0PREDICTED: uncharacterized protein LOC105968647
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A022QL900.0A0A022QL90_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1