PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M01124.1.p
Common NameLOC105969135, MIMGU_mgv1a015969mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family SBP
Protein Properties Length: 140aa    MW: 16187.8 Da    PI: 6.0421
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M01124.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.28.7e-4260135277
                       -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
               SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                       Cqve+C ad++ ak yhrrhkvCe+h+ka+vvl+s+l+qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrrk++
  Migut.M01124.1.p  60 CQVEDCLADMNAAKAYHRRHKVCEFHAKATVVLLSELRQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSS 135
                       **************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375752.1E-571139IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.103.7E-3353121IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.36857134IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.16E-3759137IPR004333Transcription factor, SBP-box
PfamPF031101.5E-3160133IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MEEDKEEGKK ITVVSELEEE GEEEEDDDED FEDDNKKKRA LTPCKRRASS VGGGSTQRSC  60
QVEDCLADMN AAKAYHRRHK VCEFHAKATV VLLSELRQRF CQQCSRFHEL SEFDEAKRSC  120
RRRLAGHNER RRKSSYDSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-3853133484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M01124.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0115881e-144HM011588.1 Mimulus guttatus ecotype Point Reyes SQUAMOSA-promoter binding protein 1 (SBP1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849329.11e-96PREDICTED: squamosa promoter-binding protein 1
SwissprotQ387414e-60SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A022QNF63e-95A0A022QNF6_ERYGU; Squamosa promoter-binding-like protein
STRINGMigut.M01124.1.p5e-96(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.29e-43squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]