PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M01250.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family bHLH
Protein Properties Length: 209aa    MW: 24208.7 Da    PI: 6.1577
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M01250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-104486754
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      e+ErrRR+++N++  eLr+l+P       + ++Ka+i + A+ YI +L
  Migut.M01250.1.p 44 EAERRRRKKLNDRQLELRSLVPII-----TNMNKATIITDAIAYIEEL 86
                      89*********************6.....58**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.64E-1536101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.7893786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-114392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-84386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1344101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-84491No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDTAFEDLCI TDRDRKNWRR MDKRKKIDQE DNSVDREFIS KNLEAERRRR KKLNDRQLEL  60
RSLVPIITNM NKATIITDAI AYIEELRNSV EELTDQILQM EATDEVRNTK FEDININDDD  120
HQMKIAPEVE VNHICGTKIW IKIIVQKKRG RLTKLMEAIS VIGFHLTDIS ITTSQQAILF  180
TSSAEGVHGG VQDADQIKKF LLEIIRSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824RRMDKRK
24552ERRRRKKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M01250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012848643.11e-150PREDICTED: transcription factor DYT1-like
TrEMBLA0A022QKR31e-111A0A022QKR3_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.M01250.1.p1e-149(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91071622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.12e-43bHLH family protein