PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.M01289.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YB

Protein Properties

Length: 216aa MW: 22687.1 Da PI: 4.6931

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.M01289.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	132.9	1e-41	53	144	4	95
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 ++++ P+an++rim++ lP naki++++ke++q+cv+efisf+t+ea+++cq e rk i++ddll a+a lGf++yv pl++yl+kyr + + Migut.M01289.1.p 53 TNHYAPLANITRIMRRGLPPNAKIGEESKEIMQDCVTEFISFITDEANERCQGEYRKMITADDLLAAMAALGFDNYVGPLTLYLNKYRAAAQ 144 78999***********************************************************************************8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.4E-38	51	150	IPR009072	Histone-fold
SuperFamily	SSF47113	1.26E-30	58	167	IPR009072	Histone-fold
Pfam	PF00808	1.4E-19	58	120	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.3E-13	84	102	No hit	No description
PRINTS	PR00615	3.3E-13	103	121	No hit	No description
PRINTS	PR00615	3.3E-13	122	140	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MENGGRSSNQ PEKNTTRATT SGIVIREGGG APAAPNAAAA DVNNPAEPAR RVTNHYAPLA 60 NITRIMRRGL PPNAKIGEES KEIMQDCVTE FISFITDEAN ERCQGEYRKM ITADDLLAAM 120 AALGFDNYVG PLTLYLNKYR AAAQELERGG PSTSHQARAV ENAHPPSPPP PVAAAAEVAV 180 DSDEYIGLTE FLNECIFGSR QNQGGGGGEG SSSGV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-37	51	140	7	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.M01289.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012848422.1	1e-157	PREDICTED: nuclear transcription factor Y subunit B-1-like
TrEMBL	A0A022QGI3	1e-138	A0A022QGI3_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.M01289.1.p	1e-156	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	8e-31	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	Migut.M01289.1.p