PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M01488.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 489aa    MW: 53452.2 Da    PI: 7.7144
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M01488.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.3e-11142166226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       +++ C f+++t tCk+G++C+F H+
  Migut.M01488.1.p 142 GEKDCAFYMQTRTCKFGESCRFDHP 166
                       7889********************8 PP
2zf-CCCH32.31.7e-10194218327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        + C++f++t  Ck+G rC+F+H++
  Migut.M01488.1.p 194 DPDCPYFLKTQRCKFGIRCRFNHPK 218
                       589********************96 PP
3zf-CCCH38.81.5e-12240264327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C f+++tG Ck+G++CkF+H++
  Migut.M01488.1.p 240 EPPCAFYMKTGSCKFGPTCKFHHPK 264
                       79*********************96 PP
4zf-CCCH352.5e-11309334126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +++e+C+f+++t  CkyG++C+++H+
  Migut.M01488.1.p 309 PGEENCPFYLKTNSCKYGATCRYNHP 334
                       589**********************9 PP
5zf-CCCH38.71.7e-12390412426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        +C+++++tG+Ck+G +CkF+H+
  Migut.M01488.1.p 390 LECDYYMKTGICKFGITCKFHHP 412
                       58********************9 PP
6zf-CCCH35.32e-11449470627
                       -SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                       C+++++tGtCk+G++C+F H+p
  Migut.M01488.1.p 449 CPYYMKTGTCKFGATCRFDHPP 470
                       ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.704140168IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016140167IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-9142166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5142167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4146165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.427191219IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-5191218IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-7194218IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-5196219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4197217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544237265IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6237264IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-10240264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6240264IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-5242262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408308336IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4308335IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-9310334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5311335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4314333IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-6386413IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.075386414IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6388414IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-10391412IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4392412IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.629443471IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5443470IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5447470IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-9449470IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5449468IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MAKQQYGYTT STYGGGGSAT TSIYKPRSAD TSLLGATSRY LSDSLTSSSA MSSSMLYAPE  60
SYSTRIPGVS AHSHGPPGVD AASTDALYNE LKRASTESLY HQTLLDAHNK GLTEAWYSTN  120
PLAKRPRYDS TSHLPVYPQR PGEKDCAFYM QTRTCKFGES CRFDHPIWVP EGGIPDWKEV  180
PPVPSECLPE RPGDPDCPYF LKTQRCKFGI RCRFNHPKDR IVSLGATEDD GTYLPERPSE  240
PPCAFYMKTG SCKFGPTCKF HHPKGVPIQP AGEEIGAEVQ TSLVGDGKTV QQPFAPALVH  300
NTKGLPIRPG EENCPFYLKT NSCKYGATCR YNHPDRYTAI APTLMTSPSA HYNYGVVAPT  360
ASLLSAYDPM LAQTALGLSP AFYPQRPGQL ECDYYMKTGI CKFGITCKFH HPLDRSTTSV  420
AATYTTESLQ ENVKLTLAGL PRREGAIHCP YYMKTGTCKF GATCRFDHPP PGEVMAVPSA  480
EEQQNGDA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M01488.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012848880.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-175C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2G9HTQ00.0A0A2G9HTQ0_9LAMI; CCCH-type Zn-finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106402125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-176floral homeotic protein (HUA1)