PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M01488.2.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 464aa    MW: 50613.1 Da    PI: 7.8264
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M01488.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22.1e-11117141226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       +++ C f+++t tCk+G++C+F H+
  Migut.M01488.2.p 117 GEKDCAFYMQTRTCKFGESCRFDHP 141
                       7889********************8 PP
2zf-CCCH32.41.6e-10169193327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        + C++f++t  Ck+G rC+F+H++
  Migut.M01488.2.p 169 DPDCPYFLKTQRCKFGIRCRFNHPK 193
                       589********************96 PP
3zf-CCCH38.91.4e-12215239327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C f+++tG Ck+G++CkF+H++
  Migut.M01488.2.p 215 EPPCAFYMKTGSCKFGPTCKFHHPK 239
                       79*********************96 PP
4zf-CCCH352.3e-11284309126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +++e+C+f+++t  CkyG++C+++H+
  Migut.M01488.2.p 284 PGEENCPFYLKTNSCKYGATCRYNHP 309
                       589**********************9 PP
5zf-CCCH38.81.6e-12365387426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        +C+++++tG+Ck+G +CkF+H+
  Migut.M01488.2.p 365 LECDYYMKTGICKFGITCKFHHP 387
                       58********************9 PP
6zf-CCCH35.31.9e-11424445627
                       -SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                       C+++++tGtCk+G++C+F H+p
  Migut.M01488.2.p 424 CPYYMKTGTCKFGATCRFDHPP 445
                       ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.704115143IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016115142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5117142IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-9117141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4121140IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.427166194IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-5166193IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-8169193IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.59E-5171194IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4172192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544212240IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6212239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6215239IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-10215239IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-5217237IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4283310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408283311IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-9285309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5286310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4289308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.075361389IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-6361388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6363389IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-10366387IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4367387IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.629418446IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5418445IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5422445IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-9424445IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5424443IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MAKQQYGYTT STYGGGGSAT TSIYKPRSAD TSLLGATSRY LSDSLTSSSA MSSSMLYAPE  60
SYSTRIPGVS AHSHGPPGVD AASTDALYNE LKRASTESKR PRYDSTSHLP VYPQRPGEKD  120
CAFYMQTRTC KFGESCRFDH PIWVPEGGIP DWKEVPPVPS ECLPERPGDP DCPYFLKTQR  180
CKFGIRCRFN HPKDRIVSLG ATEDDGTYLP ERPSEPPCAF YMKTGSCKFG PTCKFHHPKG  240
VPIQPAGEEI GAEVQTSLVG DGKTVQQPFA PALVHNTKGL PIRPGEENCP FYLKTNSCKY  300
GATCRYNHPD RYTAIAPTLM TSPSAHYNYG VVAPTASLLS AYDPMLAQTA LGLSPAFYPQ  360
RPGQLECDYY MKTGICKFGI TCKFHHPLDR STTSVAATYT TESLQENVKL TLAGLPRREG  420
AIHCPYYMKT GTCKFGATCR FDHPPPGEVM AVPSAEEQQN GDA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M01488.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754512e-35HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755242e-35HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012848881.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q31e-162C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2G9HTQ00.0A0A2G9HTQ0_9LAMI; CCCH-type Zn-finger protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-163floral homeotic protein (HUA1)