PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.M01893.2.p

Common Name

LOC105948778, MIMGU_mgv1a013834mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YA

Protein Properties

Length: 208aa MW: 23140.6 Da PI: 8.7205

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.M01893.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.7	1.7e-32	110	166	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e e+kl +ksrkpylheSRh hAlrR Rg+gGrF Migut.M01893.2.p 110 EEPVFVNAKQYHGILRRRQSRAKAEMENKL-AKSRKPYLHESRHLHALRRSRGNGGRF 166 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.3E-34	108	169	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.699	109	169	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.3E-27	111	166	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-23	112	134	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	114	134	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.1E-23	143	166	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MTSSVQSLSE NSEGDEQQNH SESNIQPSSP ANGMSLPGIP PTMHYAAPAQ LGVGNGQTAY 60 PYPDPYYRSI FAPYDTQPYP AQPYPGQPMV HMQLMGIQQA GVPLPSEAVE EPVFVNAKQY 120 HGILRRRQSR AKAEMENKLA KSRKPYLHES RHLHALRRSR GNGGRFQKKN DNQKKQTESG 180 ERSHSQDNIN LNSENEDPKN VHPQDIA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-20	109	166	1	58	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.M01893.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012827460.1	1e-152	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2
Swissprot	Q84JP1	1e-60	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A022PWC7	1e-150	A0A022PWC7_ERYGU; Uncharacterized protein
STRING	Migut.M01893.1.p	1e-149	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-59	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Migut.M01893.2.p
Entrez Gene	105948778

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]