PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.M01935.1.p

Common Name

LOC105948872, MIMGU_mgv1a014809mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LSD

Protein Properties

Length: 178aa MW: 18325.2 Da PI: 8.3375

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.M01935.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	45.3	1.4e-14	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrt+LsYPrGA++V+CalC+ V Migut.M01935.1.p 7 CGGCRTVLSYPRGATNVCCALCNVV 31 ***********************98 PP
2	zf-LSD1	36.5	8.1e-12	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+ rGA+ VRC++C+tV Migut.M01935.1.p 46 CGGCHTLLMHARGATTVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	47.7	2.5e-15	95	119	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+G+psV+Ca+C+++ Migut.M01935.1.p 95 CGNCHTMLMYPAGSPSVKCAICHFI 119 ***********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.6E-13	4	34	IPR005735	Zinc finger, LSD1-type
SuperFamily	SSF48695	3.01E-6	6	120	IPR011031	Multihaem cytochrome
Pfam	PF06943	6.0E-12	7	31	IPR005735	Zinc finger, LSD1-type
Gene3D	G3DSA:3.90.10.10	6.8E-6	20	118	No hit	No description
TIGRFAMs	TIGR01053	1.2E-12	43	73	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	7.6E-11	46	70	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.4E-12	92	122	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.8E-13	95	119	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MQSQIVCGGC RTVLSYPRGA TNVCCALCNV VTAVPPAGME MAQLICGGCH TLLMHARGAT 60 TVRCSCCHTV NRVPDIRSAA TPPPPPPNNV AHVNCGNCHT MLMYPAGSPS VKCAICHFIT 120 AVNTGDARIP IPARRPASTS TSTATAHSQS QTVVVQNPMT VDESGKLVSN VVVGVTT*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.M01935.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012827576.1	1e-124	PREDICTED: protein LSD1 isoform X1
Swissprot	Q6ASS2	8e-62	LOL3_ORYSJ; Protein LOL3
TrEMBL	A0A022PW82	1e-122	A0A022PW82_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1679	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	7e-58	LSD family protein

Link Out ? help Back to Top
Phytozome	Migut.M01935.1.p
Entrez Gene	105948872

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]