PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N00155.1.p

Common Name

LOC105961629, MIMGU_mgv1a012924mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YC

Protein Properties

Length: 236aa MW: 26460 Da PI: 5.0287

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N00155.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	176.3	2.9e-55	63	166	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ql+sfw+kq i+++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+een+rrtl+k+diaaa+trtdifd Migut.N00155.1.p 63 QLQSFWAKQyeeIDQVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENRRRTLQKNDIAAAITRTDIFD 155 89****9888999************************************************************************** PP NF-YC 91 flvdivprdel 101 flvdivpr++l Migut.N00155.1.p 156 FLVDIVPREDL 166 ******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.35E-33	32	157	IPR009072	Histone-fold
Pfam	PF00808	3.0E-21	85	148	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.8E-37	86	163	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MEQQGNGQTP YGVPPYQANQ ITRPPAPAGS TQTAPPPTQM APTQHQLAYP HINPQQQQQL 60 QQQLQSFWAK QYEEIDQVTD FKNHSLPLAR IKKIMKADED VRMISAEAPV IFARACEMFI 120 LELTLRSWNH TEENRRRTLQ KNDIAAAITR TDIFDFLVDI VPREDLRDEV LGSMPAGPVP 180 AEGLPYYYMQ PQVGGPPVGG PGMFVDPTMY GQQPPPRPYM TQQMWPQQPA PPGDS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	5e-61	71	163	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	141	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N00155.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012841321.1	1e-172	PREDICTED: nuclear transcription factor Y subunit C-3-like
Refseq	XP_012841328.1	1e-172	PREDICTED: nuclear transcription factor Y subunit C-3-like
Swissprot	Q9ZVL3	6e-84	NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBL	A0A022RZX3	1e-171	A0A022RZX3_ERYGU; Uncharacterized protein
STRING	Migut.N00155.1.p	1e-172	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3422	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	3e-79	nuclear factor Y, subunit C3

Link Out ? help Back to Top
Phytozome	Migut.N00155.1.p
Entrez Gene	105961629

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants. Mol Plant, 2017. 10(4): p. 645-648 [PMID:27871811] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714]