PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N00673.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

FAR1

Protein Properties

Length: 243aa MW: 27594 Da PI: 5.1603

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N00673.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.7	3.5e-27	74	163	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++vGF vr+ + ++s+ +g++ r++ C+k+g++ ++k k e++ ra+ r gCka++ k+ek+gkw+vt+++++HnH+l+ Migut.N00673.1.p 74 RFYNDYARRVGFVVRIMQRRRSEIDGRTLARRLGCNKQGFSPNNKGKIGPEKKLRASAREGCKATILFKMEKSGKWVVTRFVKDHNHPLV 163 5***************************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-25	74	163	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MHEVNFKGIF FLYQLAVVEG NTGAESERDD WNSNDSEEDD VIEIEENNTR SVEGGEVLEP 60 YVGMEFESEE DARRFYNDYA RRVGFVVRIM QRRRSEIDGR TLARRLGCNK QGFSPNNKGK 120 IGPEKKLRAS AREGCKATIL FKMEKSGKWV VTRFVKDHNH PLVVTAQEFT NVSDKDKKIQ 180 ELARELQRQE ELCASYREKL ISLLANVENQ TENLSSKVLA VIDNVRKAEA EALSEALALS 240 VT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N00673.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012833525.1	1e-164	PREDICTED: protein FAR1-RELATED SEQUENCE 12
TrEMBL	A0A022RKY6	1e-163	A0A022RKY6_ERYGU; Uncharacterized protein
STRING	Migut.N00673.1.p	1e-178	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11602	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	3e-63	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Migut.N00673.1.p