PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N00746.1.p

Common Name

LOC105960294, MIMGU_mgv1a018414mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 247aa MW: 26353.9 Da PI: 8.9446

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N00746.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132	2.5e-41	53	152	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++p+ +r da++slvyeA++r+rdPvyG++g i++lqqq+++l++e Migut.N00746.1.p 53 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVPDLQRADAANSLVYEANVRLRDPVYGCMGAISALQQQIQTLQSE 145 7****************************************************************************************** PP DUF260 94 lallkee 100 l+++++e Migut.N00746.1.p 146 LNAVRAE 152 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.671	52	153	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.0E-41	53	150	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MSREREGYEE IGKKLKKEID GGNNSSMGIR RNMVMGGPHP PGGAGTTLNT ITPCAACKLL 60 RRRCAEECPF SPYFSPHEPH KFAAVHKVFG ASNVSKMLLE VPDLQRADAA NSLVYEANVR 120 LRDPVYGCMG AISALQQQIQ TLQSELNAVR AEILRYKYRE AANTIIASTN AALGAVSVAE 180 LPQAPLTPTP SPPGPASAPP PRQQPPPPPP SIIVSSTSST PSSLFASPSR TASYNSISNN 240 HISYFD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-44	46	160	4	118	LOB family transfactor Ramosa2.1
5ly0_B	4e-44	46	160	4	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N00746.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012839914.1	0.0	PREDICTED: LOB domain-containing protein 15
Swissprot	Q8L5T5	7e-80	LBD15_ARATH; LOB domain-containing protein 15
Swissprot	Q9AT61	9e-80	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A022S033	1e-179	A0A022S033_ERYGU; Uncharacterized protein
STRING	Migut.N00746.1.p	1e-180	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-78	LOB domain-containing protein 13

Link Out ? help Back to Top
Phytozome	Migut.N00746.1.p
Entrez Gene	105960294

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288] Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]