PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N00963.1.p
Common NameMIMGU_mgv1a024753mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NAC
Protein Properties Length: 165aa    MW: 18583.8 Da    PI: 9.4725
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N00963.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM942.4e-29188795
               NAM  7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
                      FhPtdeel+++y++ kv + ++ +  +i+evd++++e w+Lp  +k +e+ewyfFs rd+ky+tg r+nrat +gyWkat kd+ev+s+
  Migut.N00963.1.p  1 FHPTDEELITFYIASKVFNGTFCA-VHIAEVDLNRCESWELPDVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATEKDREVYSS 88
                      9********************888.67***************8888899**************************************94 PP
2NAM60.74.6e-199315479128
               NAM  79 ksgyWkatgkdkevlsk............kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +gyWkat kd+ev+s+            +g+l g+kktLvfykgrap+ ekt+Wvmheyrl
  Migut.N00963.1.p  93 GAGYWKATEKDREVYSStsvgggggsstnGGALLGMKKTLVFYKGRAPRREKTKWVMHEYRL 154
                       58**************98888777666655566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023651.2E-221154IPR003441NAC domain
PROSITE profilePS5100540.8061164IPR003441NAC domain
SuperFamilySSF1019412.48E-32191IPR003441NAC domain
SuperFamilySSF1019415.1E-1993159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
FHPTDEELIT FYIASKVFNG TFCAVHIAEV DLNRCESWEL PDVAKMGERE WYFFSLRDRK  60
YPTGLRTNRA TGAGYWKATE KDREVYSSTS VGGAGYWKAT EKDREVYSST SVGGGGGSST  120
NGGALLGMKK TLVFYKGRAP RREKTKWVMH EYRLDGDFAR TKSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-34115423142NO APICAL MERISTEM PROTEIN
1ut4_B3e-34115423142NO APICAL MERISTEM PROTEIN
1ut7_A3e-34115423142NO APICAL MERISTEM PROTEIN
1ut7_B3e-34115423142NO APICAL MERISTEM PROTEIN
3swm_A3e-34115426145NAC domain-containing protein 19
3swm_B3e-34115426145NAC domain-containing protein 19
3swm_C3e-34115426145NAC domain-containing protein 19
3swm_D3e-34115426145NAC domain-containing protein 19
3swp_A3e-34115426145NAC domain-containing protein 19
3swp_B3e-34115426145NAC domain-containing protein 19
3swp_C3e-34115426145NAC domain-containing protein 19
3swp_D3e-34115426145NAC domain-containing protein 19
3ulx_A2e-34115421140Stress-induced transcription factor NAC1
4dul_A3e-34115423142NAC domain-containing protein 19
4dul_B3e-34115423142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N00963.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472052e-39KC847205.1 Gossypium hirsutum NAC domain protein NAC28 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835778.11e-83PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8512e-65NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A022RDT71e-118A0A022RDT7_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.N00963.1.p1e-118(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.16e-63NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]