PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01011.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NAC
Protein Properties Length: 194aa    MW: 22373 Da    PI: 6.111
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM873.4e-2781275127
               NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                       frF  +deelvv++ ++k +  ++   +vi+++++y ++PwdL+ k++ +e k+wyf+s++         ++r+t sgyW+  g +++++s+ 
  Migut.N01011.1.p   8 FRFT-SDEELVVHFSRNKSAILPNCHPDVIPDLHLYPCDPWDLNvKAMGGEGKKWYFYSRKT--------QTRITGSGYWQPIGFEEPIYSNn 91 
                       5665.8*****************88889***************9778888999*****9974........4799*****************96 PP

               NAM  96 ....kgelvglkktLvfykgrapkgektdWvmheyr 127
                            ++ +g+kk  +fy g+  +g+kt+W+mhey 
  Migut.N01011.1.p  92 nnnnCQKIIGMKKYSAFYIGKPFEGVKTNWIMHEYY 127
                       55544455***************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.6333162IPR003441NAC domain
PfamPF023658.1E-148126IPR003441NAC domain
SuperFamilySSF1019412.62E-3112160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
FQLITTRFRF TSDEELVVHF SRNKSAILPN CHPDVIPDLH LYPCDPWDLN VKAMGGEGKK  60
WYFYSRKTQT RITGSGYWQP IGFEEPIYSN NNNNNCQKII GMKKYSAFYI GKPFEGVKTN  120
WIMHEYYSVS CSSSTSRSTS SRKSNSKFDY SRWVVICRVY ENNGDVDNDG TELSCLDEIY  180
LSLDDLDEIS FPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-21816321166NO APICAL MERISTEM PROTEIN
1ut4_B2e-21816321166NO APICAL MERISTEM PROTEIN
1ut7_A2e-21816321166NO APICAL MERISTEM PROTEIN
1ut7_B2e-21816321166NO APICAL MERISTEM PROTEIN
3swm_A2e-21816324169NAC domain-containing protein 19
3swm_B2e-21816324169NAC domain-containing protein 19
3swm_C2e-21816324169NAC domain-containing protein 19
3swm_D2e-21816324169NAC domain-containing protein 19
3swp_A2e-21816324169NAC domain-containing protein 19
3swp_B2e-21816324169NAC domain-containing protein 19
3swp_C2e-21816324169NAC domain-containing protein 19
3swp_D2e-21816324169NAC domain-containing protein 19
4dul_A2e-21816321166NAC domain-containing protein 19
4dul_B2e-21816321166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087834.12e-71NAC domain-containing protein 104-like
SwissprotQ8GWK64e-59NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A022R9611e-123A0A022R961_ERYGU; Uncharacterized protein
STRINGMigut.N01011.1.p1e-143(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.19e-58xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]