PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01100.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GATA
Protein Properties Length: 347aa    MW: 38138.2 Da    PI: 4.6549
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.23.4e-16185221135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Migut.N01100.1.p 185 CQHCGVSEnsTPAMRRGPAGPRTLCNACGLMWANKGT 221
                       **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.1654681IPR010399Tify domain
SMARTSM009792.9E-44681IPR010399Tify domain
PfamPF062003.3E-84980IPR010399Tify domain
PfamPF062036.0E-15114155IPR010402CCT domain
PROSITE profilePS5101712.848114156IPR010402CCT domain
SMARTSM004019.1E-9179232IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.998179236IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-11182232No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14183226IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.24E-16184228No hitNo description
PfamPF003204.3E-14185221IPR000679Zinc finger, GATA-type
PROSITE patternPS003440185212IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDAVKGRPFD YANVPVRVHD GRGGFDADDV SGGDETMMSG ADEMAFPSRT SELSISFEGE  60
VYVFPAVTPE KLQEVLLLLG GRETPNSIPS SEFLSQVNDK AVNDVSSRPN VSRRLASLER  120
FREKRKERSF EKKIRYSCRK EVAQRMHRKN GQFAAVNDTC QTSDDNLGSS NSTPQQEPVC  180
SSRTCQHCGV SENSTPAMRR GPAGPRTLCN ACGLMWANKG TLRDLTKGAR HLFNQNDLGP  240
LDIKPIAVAA PDKSYFNQDE NRTPEQTRLV GEYGNPLLRT EQDLIEITEG IADDSSFGIE  300
NSSGNLAEQE TLDELANLSG TEFDIPANFD EQVDVDSHIG IKWPVT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835386.10.0PREDICTED: GATA transcription factor 24-like isoform X4
SwissprotQ8GXL78e-60GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A022RFF40.0A0A022RFF4_ERYGU; Uncharacterized protein
STRINGMigut.N01100.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-54ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]