PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01110.1.p
Common NameMIMGU_mgv1a021703mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 25265.9 Da    PI: 9.8726
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.21e-281059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      ri+n++nrqvtfskRrng+lKKA+ELS+LCd ev +iifsstgkl+ +ss
  Migut.N01110.1.p 10 RIDNSTNRQVTFSKRRNGLLKKAKELSILCDSEVGLIIFSSTGKLHHFSS 59
                      8***********************************************96 PP
2K-box67.74e-23821701098
             K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        +++ + ++ e+a+L+++++ Lq++ ++llGe+++ Ls+++L++Le+qLe s k iR kK++ll+++i+el  k + ++++n +L+kk 
  Migut.N01110.1.p  82 PTSEIKFWEMEAANLRQQLQYLQESYKQLLGEQISGLSIENLHNLENQLEISSKGIRMKKEQLLTDEINELNWKGNLVHRDNIELHKKA 170
                       578899********************************************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.819161IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-32289IPR002100Transcription factor, MADS-box
CDDcd002656.09E-44276No hitNo description
PRINTSPR004042.3E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-2183169IPR002487Transcription factor, K-box
PROSITE profilePS5129712.70386176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTNRQVT FSKRRNGLLK KAKELSILCD SEVGLIIFSS TGKLHHFSST  60
SMKCVMERYN KAKEEHYHLM NPTSEIKFWE MEAANLRQQL QYLQESYKQL LGEQISGLSI  120
ENLHNLENQL EISSKGIRMK KEQLLTDEIN ELNWKGNLVH RDNIELHKKA NLVDQANAKF  180
HNKASTAVES CLKTYIRKEC GNNAVTDIVF DKNRVNRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-22176176MEF2C
5f28_B5e-22176176MEF2C
5f28_C5e-22176176MEF2C
5f28_D5e-22176176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01110.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087974.21e-102MADS-box transcription factor 23-like
RefseqXP_020551897.11e-102MADS-box transcription factor 23-like
RefseqXP_020551898.11e-102MADS-box transcription factor 23-like
RefseqXP_020551899.11e-102MADS-box transcription factor 23-like
SwissprotQ6EP491e-83MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A022RFE61e-159A0A022RFE6_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-85AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]