PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01120.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 241aa    MW: 26406.8 Da    PI: 8.0994
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.45.9e-212472149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      k+ien snrqvtfskRr g++KKA+EL++L +a++a+i+ s   +++ +
  Migut.N01120.1.p 24 KKIENLSNRQVTFSKRRVGLFKKASELCILSGAQIAIIVHSLGKRVFSF 72
                      68*************************************9977776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.2921676IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-291675IPR002100Transcription factor, MADS-box
CDDcd002651.55E-311785No hitNo description
SuperFamilySSF554551.7E-241786IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-181838IPR002100Transcription factor, MADS-box
PfamPF003195.3E-202572IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-183853IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-185374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MVMLRENGST VKKTTQGRKK IEIKKIENLS NRQVTFSKRR VGLFKKASEL CILSGAQIAI  60
IVHSLGKRVF SFGHPTADSV VDRYLGGGGG GREAHLEAAK TRDYNKHYSD VCKKLEVEKK  120
RREAIEEAKR VEGYAAAASG LWWDDADVEG MDLDELVQYA EALEELMKNV TMRANDFMLM  180
RNSNSLRPVA AAGANSMDIA AAAAYSVDDT TAFGNQSHLS GGFDYHDNCG IHHGFGQGQF  240
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835329.11e-180PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A022RFX21e-158A0A022RFX2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-36AGAMOUS-like 62