PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01244.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 96aa    MW: 11001.4 Da    PI: 10.0966
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01244.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.6e-081358244
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      g+WT +E +l+ +a +++  +   +W  +a+ +g g++  ++k ++
  Migut.N01244.1.p 13 GSWTVQENKLFEKALARFDRDtpdRWQNVAAAVGSGKSTDEVKRHY 58
                      79*****************99************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-5662IPR009057Homeodomain-like
PROSITE profilePS500906.713762IPR017877Myb-like domain
SMARTSM007179.5E-71164IPR001005SANT/Myb domain
PfamPF002495.8E-71358IPR001005SANT/Myb domain
SuperFamilySSF466891.22E-111370IPR009057Homeodomain-like
CDDcd001672.95E-41458No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MASNSVSSRR PGGSWTVQEN KLFEKALARF DRDTPDRWQN VAAAVGSGKS TDEVKRHYDI  60
LMEDLRRIES GRVPLPNYRN ISFEEETRLL KFLKM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-27692287RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01244.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830960.12e-65PREDICTED: protein RADIALIS-like 4
SwissprotQ1A1733e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A022RRB56e-58A0A022RRB5_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.19e-36RAD-like 6