PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01413.1.p
Common NameLOC105960532, MIMGU_mgv1a012676mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27997.8 Da    PI: 9.0659
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01413.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.28.1e-32958150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 
  Migut.N01413.1.p  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58
                      79**********************************************95 PP
2K-box1011.7e-3380169998
             K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        ++++++s+ qe++kLk+++++Lqr+qRhllGedL++Ls+keL++Le+qLe +l++ R++K+++l+eq+eel++ke+el + nk+L+ k+
  Migut.N01413.1.p  80 SADRESQSWFQEVSKLKAKYDSLQRTQRHLLGEDLGPLSIKELHNLEKQLEVALSQARQRKTQILMEQMEELRRKERELGDMNKQLKIKV 169
                       578899********************************************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.782161IPR002100Transcription factor, MADS-box
CDDcd002652.39E-44272No hitNo description
SuperFamilySSF554556.15E-34281IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.9E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-333859IPR002100Transcription factor, MADS-box
PfamPF014862.7E-3080169IPR002487Transcription factor, K-box
PROSITE profilePS5129717.05785175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010094Biological Processspecification of carpel identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGST  60
STTKTLERYQ HCCFNPPENS ADRESQSWFQ EVSKLKAKYD SLQRTQRHLL GEDLGPLSIK  120
ELHNLEKQLE VALSQARQRK TQILMEQMEE LRRKERELGD MNKQLKIKVS MEMSSIEAEG  180
QSLRAFPSSW NIQGSTSETI SFPLQIQSSN PMEIEPEPFL QIGYHRYNIG EGSNGYLINS  240
GFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-23180178MEF2C
5f28_B7e-23180178MEF2C
5f28_C7e-23180178MEF2C
5f28_D7e-23180178MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01413.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840172.11e-180PREDICTED: MADS-box transcription factor 6-like
RefseqXP_012840173.11e-180PREDICTED: MADS-box transcription factor 6-like
SwissprotQ8LLR11e-124MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A022R8511e-179A0A022R851_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.16e-95AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]