PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01445.1.p
Common NameLOC105960557, MIMGU_mgv1a008557mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 370aa    MW: 39903.7 Da    PI: 6.419
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01445.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-08103127126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ykt+lC+ f++ GtC+y  +C+FaH+
  Migut.N01445.1.p 103 YKTKLCCKFRA-GTCPYITNCNFAHS 127
                       9**********.*************8 PP
2zf-CCCH17.48.1e-06174199126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       yk + C+ f+    C+yG++C+F H+
  Migut.N01445.1.p 174 YKGRHCKKFYTEEGCPYGESCTFLHD 199
                       78888********************7 PP
3zf-CCCH42.88.4e-14255280126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +kt++C+ + +tG+C++G +C+FaHg
  Migut.N01445.1.p 255 WKTRICNKWEQTGYCPFGTKCHFAHG 280
                       8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.27E-899133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-14100135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272102129IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-4102128IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-6103127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-7172201IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-9172201IPR000571Zinc finger, CCCH-type
SMARTSM003560.26173200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.854173201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-10251285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-17251285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.216254282IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-8254281IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-11255280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDYNRENGFS SGNVVQILTG NSVNNVDENW GSASNDQAVW ATEDDYGMWN NEISMDLDSN  60
NYEIRVSQSR SGSEPPNKRS RNSQSGDLVA SNNRSKAIGK MFYKTKLCCK FRAGTCPYIT  120
NCNFAHSLEE LRKPPPNWQE IVAAHDEEKG VSSEPREEFQ IPILGVTEDA QRSYKGRHCK  180
KFYTEEGCPY GESCTFLHDE QSKARESVAI SLGPGSGGGG GGGGVGGGGA GAGGGGYGGG  240
NGSNGNVMTL KPSNWKTRIC NKWEQTGYCP FGTKCHFAHG AAELHQYGGG PLDSEVNDST  300
TPDAKQWSTP AKTSVDSVLA SINSDSYHIN VPSQRLSSVT HKTGLRAGRK WKGPDKISKI  360
YGDWIDDLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01445.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840199.10.0PREDICTED: zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-119C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A022R8800.0A0A022R880_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-122C3H family protein