PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01471.1.p
Common NameMIMGU_mgv1a020553mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 346aa    MW: 38609.6 Da    PI: 7.0919
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01471.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.88.9e-093050526
                      --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                      +C f+++ G C yG+rC++ H+
  Migut.N01471.1.p 30 ICTFYQK-GLCAYGSRCRYDHV 50
                      7******.*************7 PP
2zf-CCCH18.63.2e-06126148326
                       S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                       +++C+ fa+ G+C++G +C+ +Hg
  Migut.N01471.1.p 126 RPICS-FAAAGECPHGLNCPHIHG 148
                       78999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.15123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.432124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3522552IPR000571Zinc finger, CCCH-type
SMARTSM003560.0022651IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-52849IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-63050IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-43049IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.239123150IPR000571Zinc finger, CCCH-type
SMARTSM003560.0056124149IPR000571Zinc finger, CCCH-type
SuperFamilySSF578505.89E-13179256No hitNo description
Gene3DG3DSA:3.30.40.103.2E-10187251IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001623.80E-4191251No hitNo description
SMARTSM001841.8E-7192249IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.357192250IPR001841Zinc finger, RING-type
PfamPF000972.2E-7192249IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180216225IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.25279307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.765279308IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
VLCKFFAHGA CLKGEHCEYS HDWKAPPNNI CTFYQKGLCA YGSRCRYDHV KVSRLQSPDV  60
SSSADVSSAS EFSSGTATAV SADRSASTRP FYPPSQPAWE ENFVSSDTLL TEDDFVDVGG  120
VDPASRPICS FAAAGECPHG LNCPHIHGDL CPTCKKHCLH PFRPQEREEH MKICEKRQRH  180
LEALTHSQEI ECSVCLENVL SKPTPAERKF GILSECDHPF CISCIRNWRS SSSASGMDPH  240
SALRSCPICR KLSYFVIPSV IWYSSKEEKH EIVETYKAKL KSIDCKHFDF GNGSCPFGTS  300
CFYKHMYGDG RHEEVVIRHL GAEDGNTVIA KDIRLSDFLS NMRIR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01471.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844691.10.0PREDICTED: E3 ubiquitin-protein ligase makorin, partial
SwissprotE0X9N41e-162C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A022QXV30.0A0A022QXV3_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-153C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]