PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01504.1.p
Common NameLOC105952506, MIMGU_mgv1a018919mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 230aa    MW: 26119.7 Da    PI: 7.5554
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01504.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.91.1e-221663249
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      +ie k   qvtfskRr g++KKA+EL++LC++e+a+i+fs+ gk++ +
  Migut.N01504.1.p 16 KIEVKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPAGKVFSF 63
                      68889999*************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.06E-27779IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-34766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.287767IPR002100Transcription factor, MADS-box
CDDcd002651.41E-34876No hitNo description
PRINTSPR004045.3E-19929IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241663IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-192944IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-194465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAKKPSMGRQ KIKIEKIEVK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPAGKV  60
FSFGHPNVES IVDRFLPRNS ATNNNTNINM NITNNNGGPY HIIEAQRNAS VRELNLQLGQ  120
VTYELDLERK RGENLDSMRK KNETHYWWEA PVEKLGLEEL EQLKTAMEDL KENVSQQLTK  180
MMNIPSNIYM SNNNGVFDQY ESKPSQLAIV ADHENNNEQL LAFNCDATF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-15797195MEF2C
5f28_B6e-15797195MEF2C
5f28_C6e-15797195MEF2C
5f28_D6e-15797195MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01504.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831522.11e-160PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK26e-50AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A022RR171e-159A0A022RR17_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-45AGAMOUS-like 61
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]