PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N01603.1.p

Common Name

LOC105967312, MIMGU_mgv1a012967mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YA

Protein Properties

Length: 235aa MW: 25895.7 Da PI: 9.3523

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N01603.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	99.2	4.1e-31	120	176	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RR+ Ra+++ ekkl k++kpylheSRhkhA++R+Rg+gGrF Migut.N01603.1.p 120 EEPVYVNAKQYRGILRRREIRARADLEKKL-VKNKKPYLHESRHKHAMKRARGTGGRF 176 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	9.0E-35	118	179	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.57	119	179	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	7.0E-27	121	176	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	7.9E-22	122	144	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	7.9E-22	153	176	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MPTLVKSKDR QPYNQPWWHQ EDASVNPVNQ ATNEAISNDT ETTAALLSGV NESNNGKEEQ 60 LLDANSQMEL VGHSIMLTSS YPYPTGPQYG GMLTYGAPVH PHLLGYLPGA RMPLPLEMEE 120 EPVYVNAKQY RGILRRREIR ARADLEKKLV KNKKPYLHES RHKHAMKRAR GTGGRFLNTK 180 KLDENANNST SGDSKSSGSS SITNGNSSSS RQQADVAVYY NNWNEAPPQG PSSG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-19	120	183	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	169	RHKHAMKRAR

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N01603.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012847366.1	1e-174	PREDICTED: nuclear transcription factor Y subunit A-7-like
Swissprot	Q945M9	5e-38	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A022QP35	1e-172	A0A022QP35_ERYGU; Uncharacterized protein
STRING	Migut.N01603.1.p	1e-173	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11232	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	2e-20	nuclear factor Y, subunit A9

Link Out ? help Back to Top
Phytozome	Migut.N01603.1.p
Entrez Gene	105967312

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]