PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01672.1.p
Common NameLOC105952418, MIMGU_mgv1a015135mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 168aa    MW: 18644.2 Da    PI: 5.2759
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01672.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3413.3e-1353138496
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       vl++s+ l +g l +p +  ++     ++++ ++l    gr+W++ +   ++  r  + + Wk Fv +n+Lk+gD +vF+l+++s+++l +kv
  Migut.N01672.1.p  53 VLSKSHLLPNG-LFVPVTISSTLP---RTTVPVVL-RHGGRTWNMSY--VGNMVRRRFDSQWKTFVADNNLKVGDGCVFELMESSGTNLIFKV 138
                       55555556555.555666554332...23333444.4588*******..666666668999*********************99999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.71E-1546134IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-1646142IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-1548142No hitNo description
PROSITE profilePS5086311.39249144IPR003340B3 DNA binding domain
SMARTSM010197.0E-650144IPR003340B3 DNA binding domain
PfamPF023622.3E-1154138IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MLDNSKQDAV QKKTQAPEHE EIGSTRFDSI SEAAKADEDE ICYLSGKPYF DLVLSKSHLL  60
PNGLFVPVTI SSTLPRTTVP VVLRHGGRTW NMSYVGNMVR RRFDSQWKTF VADNNLKVGD  120
GCVFELMESS GTNLIFKVMI VRGDIPPQLQ ELIDSRGKSD EAPIVLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01672.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831419.11e-122PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A022RR671e-121A0A022RR67_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.12e-07VERDANDI