PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01673.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 177aa    MW: 19634.5 Da    PI: 7.4519
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01673.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.31e-11931474096
                       ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3  40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          g++W++ +  ++   r  +   Wk Fv +n+Lk+gD +vF+l+++++++ v+kv
  Migut.N01673.1.p  93 RHGGKTWNMSY--CGDAARPRFDYKWKAFVADNHLKVGDGCVFELMESDSRNAVFKV 147
                       4579*******..888888888999*******************9987777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-1354149IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-1356151IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.51858153IPR003340B3 DNA binding domain
CDDcd100172.10E-1283151No hitNo description
PfamPF023621.6E-992147IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MVSPSNRVAR LATVKMEACT TEHAPGNEEI RRAEFDSSPE AAKADEDEIC YLSGKPYFDI  60
IIGKTHLNRP RGLYPPISMT QRLPRATIPA VLRHGGKTWN MSYCGDAARP RFDYKWKAFV  120
ADNHLKVGDG CVFELMESDS RNAVFKVMIV RGEIPPELQA LIDSRGKSEA VPIVID*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01673.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831372.11e-130PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A022RQD61e-116A0A022RQD6_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-08related to vernalization1 1