PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01802.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 256aa    MW: 29212.5 Da    PI: 8.4593
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01802.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.29.1e-28959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+ien   rqvtfskRr g++KKA+EL vLC+aevaviifs+tgkl+e+++
  Migut.N01802.1.p  9 KKIENANSRQVTFSKRRSGLFKKAHELAVLCEAEVAVIIFSNTGKLFEFCN 59
                      68***********************************************85 PP
2K-box691.5e-238317310100
             K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                        ++++++  +e++  + eie+L+ +q +llG++L+ +sl+eL  LeqqL+++l  i++kK+++lleq+e+ + kek+++ +n+ Lr+++ee
  Migut.N01802.1.p  83 RQKQEQTEPHEADFFRGEIEKLRIKQLQLLGKNLDGMSLQELGALEQQLNEGLICIKDKKEKVLLEQVEQYKVKEKRAEMANEILRRQIEE 173
                       466788899*******************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.819161IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-41160IPR002100Transcription factor, MADS-box
CDDcd002654.31E-41270No hitNo description
SuperFamilySSF554551.57E-32276IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-28323IPR002100Transcription factor, MADS-box
PfamPF003195.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-283859IPR002100Transcription factor, MADS-box
PfamPF014868.3E-1883171IPR002487Transcription factor, K-box
PROSITE profilePS5129712.80387177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRGKIEIKK IENANSRQVT FSKRRSGLFK KAHELAVLCE AEVAVIIFSN TGKLFEFCNS  60
DMKNILARYK RGLEVTKAPA VKRQKQEQTE PHEADFFRGE IEKLRIKQLQ LLGKNLDGMS  120
LQELGALEQQ LNEGLICIKD KKEKVLLEQV EQYKVKEKRA EMANEILRRQ IEEFRAYLPS  180
TSYQNMLCIE YNSIPSETLP LIKEGSRSPE KVLEDAVDSD TTLQLGPPST ICRKRKSPDV  240
ETDHSNNSET RNLLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-21194178MEF2C
5f28_B3e-21194178MEF2C
5f28_C3e-21194178MEF2C
5f28_D3e-21194178MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17885PAVKRQKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01802.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830648.10.0PREDICTED: MADS-box transcription factor 23-like
SwissprotQ392951e-63AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A022RSF81e-107A0A022RSF8_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87752226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.12e-65AGAMOUS-like 15