PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N01867.1.p

Common Name

MIMGU_mgv1a026994mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YC

Protein Properties

Length: 280aa MW: 30323.4 Da PI: 4.9466

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N01867.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	55.9	9.5e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l ++ + + +t++ ++ +v + ++fdfl ++v + Migut.N01867.1.p 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDHTYGITVQRGAKTVNSLHLKHCVHSYNVFDFLKEVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.0E-19	3	89	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.0E-25	3	72	IPR009072	Histone-fold
Pfam	PF00808	5.9E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDHT YGITVQRGAK 60 TVNSLHLKHC VHSYNVFDFL KEVVSKVPDY GNSDAAADTS KRRKVVANEP NDSDEESKKN 120 VMQEPSNASS TGRGRGRGRG RGRGRASKAT EREPPRNETE STSQQTTKQI SSPNRPMETN 180 SELLNESKEN VKANDVAGQE TRNFDLNAGV DEGTDKATAS TPAAAAAAAA DVAAASGPSD 240 AKAEDFGLSE IDRMAVDPVH LTQLSSRLDE EDEDYDEEE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-21	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	144	RGRGRGRGRGR
2	136	145	RGRGRGRGRA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N01867.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012830670.1	0.0	PREDICTED: dr1-associated corepressor-like
TrEMBL	A0A022RS72	0.0	A0A022RS72_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.N01867.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7960	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	5e-65	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Migut.N01867.1.p