PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N01993.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YB

Protein Properties

Length: 145aa MW: 16403.4 Da PI: 6.5146

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N01993.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	143.8	4e-45	4	98	3	97
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 e++++lPianv+r+mkk+lP akis++ake +q+c+sefi fvt+easd+c++e+rkt+ngdd++wal +lGf++y e++ yl+++r +e+e+ Migut.N01993.1.p 4 EHEKMLPIANVGRMMKKILPPSAKISREAKERMQQCASEFICFVTGEASDRCHKENRKTVNGDDICWALRSLGFDNYSEAMLRYLQNFRGFEREN 98 7899****************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.9E-43	3	116	IPR009072	Histone-fold
SuperFamily	SSF47113	9.47E-35	7	116	IPR009072	Histone-fold
Pfam	PF00808	4.6E-24	9	72	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.6E-14	36	54	No hit	No description
PRINTS	PR00615	1.6E-14	55	73	No hit	No description
PRINTS	PR00615	1.6E-14	74	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MSDEHEKMLP IANVGRMMKK ILPPSAKISR EAKERMQQCA SEFICFVTGE ASDRCHKENR 60 KTVNGDDICW ALRSLGFDNY SEAMLRYLQN FRGFERENAN QSNNCKAYKG EEKDEESNIR 120 GDISAPSYDF GILERGGTSS SKPY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-34	4	92	3	91	Transcription factor HapC (Eurofung)
4g92_B	2e-34	4	92	3	91	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N01993.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012847412.1	2e-85	PREDICTED: nuclear transcription factor Y subunit B-5-like
Refseq	XP_012857060.1	6e-85	PREDICTED: nuclear transcription factor Y subunit B-4-like
Swissprot	O04027	2e-47	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A022QM27	8e-84	A0A022QM27_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.N01993.1.p	1e-104	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	7e-50	nuclear factor Y, subunit B4

Link Out ? help Back to Top
Phytozome	Migut.N01993.1.p

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]