PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01994.1.p
Common NameMIMGU_mgv1a021400mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YB
Protein Properties Length: 134aa    MW: 15053.7 Da    PI: 4.4692
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01994.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB92.53.9e-29687597
             NF-YB  5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                      +  lPianv+r+mkk+lP  akis++ake +q+c+sefi fvt+ea+++            d++wal++lGf++y e++  yl+++r +e+e+
  Migut.N01994.1.p  6 ELSLPIANVGRMMKKILPPSAKISREAKERMQQCASEFICFVTGEAAHR-----------YDICWALSSLGFDNYSEAMLRYLQNFRGFERER 87
                      5679******************************************876...........59****************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-284105IPR009072Histone-fold
SuperFamilySSF471136.87E-246107IPR009072Histone-fold
PfamPF008081.6E-14854IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.5E-73654No hitNo description
PRINTSPR006153.5E-76381No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MSDEIELSLP IANVGRMMKK ILPPSAKISR EAKERMQQCA SEFICFVTGE AAHRYDICWA  60
LSSLGFDNYS EAMLRYLQNF RGFERERANQ NNKANNSCSD EKDEEISYGD DNTTSTPSFD  120
FGILERGETS TAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-22981891Transcription factor HapC (Eurofung)
4g92_B4e-22981891Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01994.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012850788.13e-65PREDICTED: nuclear transcription factor Y subunit B-4-like
SwissprotO040272e-33NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A022QJW46e-95A0A022QJW4_ERYGU; Uncharacterized protein
STRINGMigut.N01994.1.p1e-95(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.11e-35nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]