PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N02396.1.p

Common Name

LOC105958676, MIMGU_mgv1a019702mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

C2H2

Protein Properties

Length: 513aa MW: 55759.4 Da PI: 7.707

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N02396.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00044	107	127	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C+ C++sF+++ +L H+r Migut.N02396.1.p 107 HPCGLCNRSFRSQKSLFGHMR 127 78******************8 PP
2	zf-C2H2	12.5	0.00043	385	407	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k+F+++ L H ++H Migut.N02396.1.p 385 YTCDVCHKTFKSHQALGGHRSSH 407 9***************9999998 PP
3	zf-C2H2	13	0.0003	446	468	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+++F++ L H r+H Migut.N02396.1.p 446 YVCEICKMVFTSGQALGGHKRRH 468 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.5E-6	50	73	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.037	50	78	IPR007087	Zinc finger, C2H2
SMART	SM00355	5.9	50	73	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	51	73	IPR007087	Zinc finger, C2H2
Pfam	PF13912	5.2E-8	106	131	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.91E-5	106	131	No hit	No description
PROSITE profile	PS50157	9.827	107	129	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.012	107	129	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	109	129	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.36E-9	384	407	No hit	No description
Pfam	PF13912	2.3E-8	385	408	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.263	385	412	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.03	385	407	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	387	407	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.36E-9	441	468	No hit	No description
Pfam	PF13912	5.4E-9	445	469	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.577	446	473	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.034	446	468	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	448	468	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MDKKEDSKEA GEPCGKILVK LRLPKMPEVE DQVKTESPAA AAADEETRSR CCRECGRIFS 60 SGKALGGHMS SAHVQANKDL SAAKKLKNKH SDGCSSSSSP PPAAARHPCG LCNRSFRSQK 120 SLFGHMRCHP DRLWRGMAPP LPTPPPPHRR RINSDEHSPD SHNSDPGPHA AGPSAPRPVV 180 DMAESLRSWP TSAKRNRGPI RPAAAAADDK DLALAHQLVK MSFGEVEEST SSSSTPNNNL 240 IEPYNLNNHQ ENHFISKTLK RDRDFISGPE SDDRPSSKKL KIRERDDDDD FDNRRAAFVA 300 SPKIESCKGK GKEKVPPPLM LQPDVIDSDD ESCLIAMNDL MMAAPPPPPP QPSPPLPPPP 360 AGDNKRNPIT NQENGKLISS SPQKYTCDVC HKTFKSHQAL GGHRSSHNKF KFSVTNTDDC 420 LEGEDGGGAR IKKDGAKVDQ VDESAYVCEI CKMVFTSGQA LGGHKRRHST MASHAAILAE 480 ASSKKPKVVL DFDLNEPPKE QDNDDDGEAS NH*

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MDKKEDSKEA GEPCGKILVK LRLPKMPEVE DQVKTESPAA AAADEETRSR CCRECGRIFS  60
SGKALGGHMS SAHVQANKDL SAAKKLKNKH SDGCSSSSSP PPAAARHPCG LCNRSFRSQK  120
SLFGHMRCHP DRLWRGMAPP LPTPPPPHRR RINSDEHSPD SHNSDPGPHA AGPSAPRPVV  180
DMAESLRSWP TSAKRNRGPI RPAAAAADDK DLALAHQLVK MSFGEVEEST SSSSTPNNNL  240
IEPYNLNNHQ ENHFISKTLK RDRDFISGPE SDDRPSSKKL KIRERDDDDD FDNRRAAFVA  300
SPKIESCKGK GKEKVPPPLM LQPDVIDSDD ESCLIAMNDL MMAAPPPPPP QPSPPLPPPP  360
AGDNKRNPIT NQENGKLISS SPQKYTCDVC HKTFKSHQAL GGHRSSHNKF KFSVTNTDDC  420
LEGEDGGGAR IKKDGAKVDQ VDESAYVCEI CKMVFTSGQA LGGHKRRHST MASHAAILAE  480
ASSKKPKVVL DFDLNEPPKE QDNDDDGEAS NH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N02396.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012838141.1	0.0	PREDICTED: uncharacterized protein LOC105958676
TrEMBL	A0A022RAP1	0.0	A0A022RAP1_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2050	22	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	9e-17	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Migut.N02396.1.p
Entrez Gene	105958676