PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N02403.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YC

Protein Properties

Length: 284aa MW: 31594 Da PI: 4.9347

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N02403.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	54.6	2.4e-17	7	86	19	98
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++P arikki++adedv +++ +P l+ska elf+ l r++ + ++ +t++ ++++v++ ++fdfl d+v + Migut.N02403.1.p 7 SRFPAARIKKIMQADEDVGKMALPVPLLVSKALELFLQALCDRTYDITLKKGAKTVNSLHLKQCVQSFNVFDFLRDTVSK 86 689*************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.2E-24	2	72	IPR009072	Histone-fold
Pfam	PF00808	1.8E-17	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	5.14E-18	18	88	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MKKKLDSRFP AARIKKIMQA DEDVGKMALP VPLLVSKALE LFLQALCDRT YDITLKKGAK 60 TVNSLHLKQC VQSFNVFDFL RDTVSKVPDL GGSDAVVAED RSATKRRKIT ENEDEHDKDD 120 PNKIGMHETG DTISSGVIRG RGRGRGRGRG RGRGRGRGTR TLQRDLVKCE KFEDDPDISD 180 KDDENENERL GKTNNLVGAV DSRTTTGEKD TDKSVIKFDL NAELDEKDDS TLTESSNKPS 240 SDKKHEDIPG WSLDDVARLD IDTVRLANLN NGANEEEEDY DEE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-21	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	156	RGRGRGRGRGR
2	148	157	RGRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N02403.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012838142.1	0.0	PREDICTED: dr1-associated corepressor-like
TrEMBL	A0A022RAP7	0.0	A0A022RAP7_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7555	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	6e-58	NF-YC family protein

Link Out ? help Back to Top
Phytozome	Migut.N02403.1.p