PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N02436.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

YABBY

Protein Properties

Length: 188aa MW: 20751.6 Da PI: 9.887

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N02436.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	197.6	5.4e-61	2	158	2	168
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstsl.fkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 +v+ +se+vCyv+CnfCnt+lavsvP +s+ +++v vrCGhC++llsvn+ + l ++ + + ++ + ++ + + s +e++++++ Migut.N02436.1.p 2 SVDAASERVCYVHCNFCNTVLAVSVPCSSMlSNIVRVRCGHCSNLLSVNMGSLLHSLHLQDT-NFQKQPATAGSSSTTCKRFGSLMEMTTTTK 93 78899*******************9996269***************9999988885.444444444444444444544444433322 PP YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 ++++ ++ +p PP krqrvPsaynrfikeeiqrikasnP++ hreafs+aaknWahfP+i + Migut.N02436.1.p 94 HHEQR-----PTTTTTP-----KCPPLKRQRVPSAYNRFIKEEIQRIKASNPEMRHREAFSTAAKNWAHFPDINN 158 22222.....2223333.....589********************************************9965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.4E-63	6	157	IPR006780	YABBY protein
SuperFamily	SSF47095	9.29E-8	99	155	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.9E-5	113	155	IPR009071	High mobility group box domain
CDD	cd00084	2.30E-4	114	150	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSVDAASERV CYVHCNFCNT VLAVSVPCSS MLSNIVRVRC GHCSNLLSVN MGSLLHSLHL 60 QDTNFQKQPA TAGSSSTTCK RFGSLMEMTT TTKHHEQRPT TTTTPKCPPL KRQRVPSAYN 120 RFIKEEIQRI KASNPEMRHR EAFSTAAKNW AHFPDINNYG LKLGANKLAK LDHHADAAGG 180 DRSTHRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N02436.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT372783	4e-41	KT372783.1 Mentha spicata YABBY family protein 2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012838499.1	1e-140	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q9XFB0	2e-56	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A022R7P1	9e-99	A0A022R7P1_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	4e-50	YABBY family protein

Link Out ? help Back to Top
Phytozome	Migut.N02436.1.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]