PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N02495.1.p
Common NameLOC105958858, MIMGU_mgv1a022635mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 301aa    MW: 34978.6 Da    PI: 8.8016
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N02495.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-05144163120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++C +C+k+F+r  n++ H+
  Migut.N02495.1.p 144 FSCDICSKTFNRYNNMQMHM 163
                       89*****************9 PP
2zf-C2H211.10.0012232254423
                       T...TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   4 p...dCgksFsrksnLkrHirtH 23 
                       +    CgksF  k + ++H +++
  Migut.N02495.1.p 232 TkspTCGKSFAVKGDWRTHEKNC 254
                       55559**************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.58E-5140167No hitNo description
PROSITE profilePS5015710.45144171IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.3E-5144163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.3E-5215252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MMSSFFEFPL YYQQQQQEQN RNHGHEEEYF YETIQCLPLL SRFTEQKQLF KEEENIEYGE  60
KKSRFHEETI AVALHIGLPD QYNYFKEDEF NVKTKTNKKK KKNCVNTNKN INGGCMSSTA  120
LSGGDERRFW IPTPAQILVG PMQFSCDICS KTFNRYNNMQ MHMWGHGSEF RKGPQSLRGT  180
QPTAMLRLPC YCCTAGCKNN INHPRGKPLK DFRTLQTHYK RKHASQKPFL CTKSPTCGKS  240
FAVKGDWRTH EKNCGKLWFC TCGSDFKHKR SLKDHVRSFG TGHEGCFNTD EKDCITDESF  300
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N02495.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838315.10.0PREDICTED: zinc finger protein WIP3
SwissprotQ9SGD12e-99ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A022R8L80.0A0A022R8L8_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.12e-98WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]