PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N02605.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 235aa    MW: 27241.6 Da    PI: 3.9332
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N02605.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.16.8e-1313941298
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                      +s ++++p +f+ +++   + +k ++l+d+  + Wev++  +++  ++++ +GW +F ++n L+ +Df+++ +dgr+ f   +++f 
  Migut.N02605.1.p 13 SSEIFRIPASFVMKMK--RALPKRVILRDRYTNMWEVEVATDGGY-SCYFIEGWTQFYEDNSLELKDFMILDYDGRNLF--DFRIFG 94
                      567899******7775..568999***************655555.455666**********************98877..666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.491296IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-15596IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.9E-7796IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-16996IPR015300DNA-binding pseudobarrel domain
CDDcd100177.79E-111193No hitNo description
PfamPF023626.3E-101392IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDSPQAFVNC ITSSEIFRIP ASFVMKMKRA LPKRVILRDR YTNMWEVEVA TDGGYSCYFI  60
EGWTQFYEDN SLELKDFMIL DYDGRNLFDF RIFGRNSLEK KGVGSLKLNE HNTINQDYDD  120
ASMDDDHGDD DDDIHGDDVD DDDDIHDDDI DVVDVDVDDD DDDDDVDDNG DGDGDDIPRE  180
RIFKKKDLPD CYGAEIFRPE NPFFVSRSRL SGRQNELVLF FLDYPFIHHY FISN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N02605.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838182.11e-103PREDICTED: B3 domain-containing protein At5g60142-like, partial
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-13B3 family protein