PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N02625.1.p
Common NameLOC105958885, MIMGU_mgv1a013837mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 210aa    MW: 22825.8 Da    PI: 5.1554
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N02625.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.54e-42371371101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+C+++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ l+++
  Migut.N02625.1.p  37 PCAACKILRRRCVDKCVLAPYFPPNDPLKFTTAHRVFGASNIIKFLQELPEVQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVNDLQEQ 129
                       7******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       la+ +++l
  Migut.N02625.1.p 130 LAKSQAQL 137
                       ***99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.07736137IPR004883Lateral organ boundaries, LOB
PfamPF031954.7E-4237134IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEGSTTDTTS VTNYGSVSSA SSSPPRPQSS AVLVASPCAA CKILRRRCVD KCVLAPYFPP  60
NDPLKFTTAH RVFGASNIIK FLQELPEVQR ADAVSSMVYE ANARLRDPVY GCAGAICQLQ  120
KQVNDLQEQL AKSQAQLTNF QCQNANLMAL ICMEMTQSPL AISSPLIFDH QQQNSYDNFA  180
SCLGNNTSFL DDQNILGILS SDSQQFVWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-43351429116LOB family transfactor Ramosa2.1
5ly0_B1e-43351429116LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N02625.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838343.11e-154PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9SK082e-64LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A022RB961e-153A0A022RB96_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.12e-66LOB domain-containing protein 11