PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N02717.1.p
Common NameMIMGU_mgv1a024545mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family bHLH
Protein Properties Length: 261aa    MW: 29331.1 Da    PI: 7.6503
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N02717.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08163203954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Migut.N02717.1.p 163 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 203
                       699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.218154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-13159212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-14159213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-14160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-6164203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-6177208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDIEFMKSAA EDQMEMMLMQ MDKLPDFSTA TYDHHNIPLM DEFTNNNNTV LENPTFMNHH  60
HHHHHPSSTI SFSGGVHHEP PSFLQHPPPN TSGGRWQTNE YYDDHSGSGG GAAAQKRHSN  120
MAAMREMIFR IAAMQPIHID PESVKPPKRR NVKISTDPQS VAARHRRERI SERIRILQRL  180
VPGGTKMDTA SMLDEAIHYV KFLKNQVQSL ERVSANRPSA AAPDGIGFPV PMLSGNYFPA  240
GMNNMKGYRQ SSPPNVQMLE *
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N02717.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575467e-99KP257546.1 Salvia miltiorrhiza clone 114 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838731.11e-164PREDICTED: transcription factor HEC2-like
SwissprotQ9SND46e-47HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A022R7T10.0A0A022R7T1_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.17e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]