PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N02889.1.p
Common NameLOC105958779, MIMGU_mgv1a011923mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 267aa    MW: 29804.6 Da    PI: 9.7689
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N02889.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.81.1e-06121140120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++C++C+k+F+r  nL+ H+
  Migut.N02889.1.p 121 FSCHICKKTFNRYNNLQMHM 140
                       89*****************9 PP
2zf-C2H210.90.0014205227123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C +Cgk+   k + ++H +++
  Migut.N02889.1.p 205 FSCRKCGKCLAVKGDWRTHEKNC 227
                       89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.43E-5112143No hitNo description
PROSITE profilePS5015710.097121148IPR007087Zinc finger, C2H2
SMARTSM003550.24121143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.2E-4121140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SMARTSM00355120168200IPR015880Zinc finger, C2H2-like
SMARTSM00355130205225IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEGSSSKNLA SNNIFSFNPI YHKDRIEAYD FFPKKSPSSS SSSSSSSTSS STKSSIKFSK  60
LFADENENED SAAVALHIGL PDYCSTNDSI KKFDANNSAE KSSCPYWIPT PAQILVGFTH  120
FSCHICKKTF NRYNNLQMHM WGHGSQFRRG PDSLKGSQPR IMVGIPCYCC EEGCRNNINH  180
PRAKPLKDFR TLQTHYKRKH GTKRFSCRKC GKCLAVKGDW RTHEKNCGKR WLCVCGSDFK  240
HKRSLKDHVA SFGSGHGPST AAAAYF*
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N02889.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838237.10.0PREDICTED: protein TRANSPARENT TESTA 1
SwissprotQ8VWG31e-104TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A022R8070.0A0A022R807_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132641517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-106C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]