PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N03130.1.p
Common NameDEF, LOC105959559, MIMGU_mgv1a012867mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27475.2 Da    PI: 9.627
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N03130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.22.5e-29959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien++nrqvt+skRrng++KKA+EL vLCda+v+++++sst+kl+ey+s
  Migut.N03130.1.p  9 KRIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKVSILMISSTQKLHEYIS 59
                      79***********************************************86 PP
2K-box87.33e-2971169199
             K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                       yqk+ g++++++++e++q++l+kLk+ ++nL++e+R+++Ge+L++L ++++ +L +++++sl+ iR+kK++ + +qi++++kk ++++e+n++
  Migut.N03130.1.p  71 YQKAVGVDVWNTHYERMQEHLKKLKDVNRNLRTEIRQRIGESLNDLGYEQMVNLIEEIDNSLTIIREKKYKAISSQIDTSKKKLRNVEEINRN 163
                       799999*************************************************************************************** PP

             K-box  94 Lrkkle 99 
                       L  +++
  Migut.N03130.1.p 164 LVLEFD 169
                       *87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.272161IPR002100Transcription factor, MADS-box
CDDcd002651.35E-37280No hitNo description
PRINTSPR004042.0E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-36395IPR002100Transcription factor, MADS-box
PfamPF003197.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-273859IPR002100Transcription factor, MADS-box
PfamPF014864.2E-1782166IPR002487Transcription factor, K-box
PROSITE profilePS5129714.36584174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD AKVSILMISS TQKLHEYISP  60
SITTKQMFDQ YQKAVGVDVW NTHYERMQEH LKKLKDVNRN LRTEIRQRIG ESLNDLGYEQ  120
MVNLIEEIDN SLTIIREKKY KAISSQIDTS KKKLRNVEEI NRNLVLEFDA RQEDPHYGLV  180
ENEGDYNSLL GFPNGGPRII ALRLPHNHHP HHHHHHHHPG LHSGGGGSDL TTFALLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-16162162MEF2C
5f28_B3e-16162162MEF2C
5f28_C3e-16162162MEF2C
5f28_D3e-16162162MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N03130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5240200.0AY524020.1 Mimulus guttatus deficiens (DEF) mRNA, DEFB paralog, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001297060.11e-177floral homeotic protein DEFICIENS
SwissprotP237061e-145DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLQ6QVX61e-175Q6QVX6_ERYGU; Deficiens
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-91MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Aagaard JE,Olmstead RG,Willis JH,Phillips PC
    Duplication of floral regulatory genes in the Lamiales.
    Am. J. Bot., 2005. 92(8): p. 1284-93
    [PMID:21646149]
  4. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  5. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]