PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.O00295.1.p
Common NameLOC105951090, MIMGU_mgv1a022938mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NAC
Protein Properties Length: 375aa    MW: 43372.9 Da    PI: 6.3646
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.O00295.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.14.7e-5571361129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +ppGfrFhPt+eelv++yL++k+++k+++l ++ik+vd+y++ePwdL++  ++ +ee+ ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk
  Migut.O00295.1.p   7 VPPGFRFHPTEEELVDYYLRRKINSKRIDL-DIIKDVDLYRIEPWDLQElcRIGTEERdEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDK 98 
                       69****************************.99**************954566665556********************************** PP

               NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +++s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
  Migut.O00295.1.p  99 AIYS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                       ****.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-605156IPR003441NAC domain
PROSITE profilePS5100559.2797156IPR003441NAC domain
PfamPF023652.2E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNTFSHVPPG FRFHPTEEEL VDYYLRRKIN SKRIDLDIIK DVDLYRIEPW DLQELCRIGT  60
EERDEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETDEN GAPQEEGWVV CRVFKKKIAS TQKHSEHDSP IWYEDHVSFM  180
PDMDSPKQHH HSYYNHPYNN NNNNNNNNIN NNNSNNTSCK NSKMEIISYL QYSGIPSDNN  240
NHHHFLHQLP LLESPKLLQP QASSFEGGAL NVNPRSNFDH NFQTNTNLFG NNINISEVLS  300
EDQVTDWRVL DKFVASQLSQ EEVVSKENDS VIINAAIQES NNMNIGGDLN SKQEIMQENN  360
ASTSSSSCPI DLWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-50715715169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.O00295.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012829936.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9FWX21e-129NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A022RSN30.0A0A022RSN3_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-121NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]