PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.O00368.1.p
Common NameMIMGU_mgv1a013641mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ERF
Protein Properties Length: 215aa    MW: 24068.8 Da    PI: 10.4915
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.O00368.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.3e-20117167255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka+++a+ kl+g
  Migut.O00368.1.p 117 HYRGVRQRP-WGKFAAEIRDP---NrKGTRVWLGTFDTAVEAAKAYDRAAFKLRG 167
                       8********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.7E-33116176IPR001471AP2/ERF domain
CDDcd000181.32E-31116175No hitNo description
SuperFamilySSF541719.81E-24117177IPR016177DNA-binding domain
SMARTSM003801.7E-38117181IPR001471AP2/ERF domain
PfamPF008471.8E-14117167IPR001471AP2/ERF domain
PROSITE profilePS5103224.579117175IPR001471AP2/ERF domain
PRINTSPR003675.8E-11118129IPR001471AP2/ERF domain
PRINTSPR003675.8E-11141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MASSDHDQSS ALDSIRQHLL DDFAFMENYS ADFSFDNQSQ ISRTSSSSSS ESSYFEFETI  60
KLPTNQKQKS FSERKPSLNI AIPSCNWVSG QSSGREVVVV VERSPVARDQ CSGERKHYRG  120
VRQRPWGKFA AEIRDPNRKG TRVWLGTFDT AVEAAKAYDR AAFKLRGRKA ILNFPLETGN  180
FNTLPENEAV AAAVVGGRKR RRGERPRRKR GEAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-30116178466ATERF1
3gcc_A6e-30116178466ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196202GRKRRRG
2197201RKRRR
3198209KRRRGERPRRKR
4204208RPRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.O00368.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR3403439e-55KR340343.1 Jasminum sambac microsatellite Js1202 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101098.13e-63ethylene-responsive transcription factor 5
SwissprotQ9LW482e-59ERF5_NICSY; Ethylene-responsive transcription factor 5
TrEMBLA0A022QMV81e-156A0A022QMV8_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.17e-40ethylene responsive element binding factor 5