PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.O00384.1.p
Common NameLOC105960798, MIMGU_mgv1a022433mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 218aa    MW: 25192.3 Da    PI: 8.1917
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.O00384.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.32e-191360148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+ Ed+ll+++v+q+G g+W++++++ g++R++k+c++rw +yl
  Migut.O00384.1.p 13 KGPWTPVEDKLLIEYVTQFGEGRWSSVSKCTGLNRSGKSCRLRWVNYL 60
                      79********************************************97 PP
2Myb_DNA-binding491.4e-1566110147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +g  T++E+ ++++++  +G++ W+tIar+++ gRt++++k++w+++
  Migut.O00384.1.p  66 KGQLTPQEQGIIIELHSIWGNK-WSTIARYLP-GRTDNEIKNYWRTH 110
                       5778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.853860IPR017930Myb domain
SuperFamilySSF466893.26E-3110107IPR009057Homeodomain-like
SMARTSM007173.8E-161262IPR001005SANT/Myb domain
PfamPF002492.1E-171360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-231467IPR009057Homeodomain-like
CDDcd001671.21E-111560No hitNo description
PROSITE profilePS5129422.79761115IPR017930Myb domain
SMARTSM007178.4E-1365113IPR001005SANT/Myb domain
PfamPF002492.3E-1366110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2368114IPR009057Homeodomain-like
CDDcd001674.61E-970111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEKYGISEQG WRKGPWTPVE DKLLIEYVTQ FGEGRWSSVS KCTGLNRSGK SCRLRWVNYL  60
RPGLKKGQLT PQEQGIIIEL HSIWGNKWST IARYLPGRTD NEIKNYWRTH FKKRPSSSKP  120
FSEVIKKRNQ FNKQKKENNV DIESISPQLV AENDSKQEEV GPDCTGADVE EINDKMLPVF  180
NQDYYHGLSW SEFSTIPMDC CLWDGLWNFG DSTTNFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26131147107B-MYB
1h8a_C8e-261311427127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.O00384.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840463.11e-161PREDICTED: transcription factor MYB48-like
SwissprotQ9LX822e-49MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A022R4Q51e-160A0A022R4Q5_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.14e-64myb domain protein 121
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]