PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.O00415.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YB

Protein Properties

Length: 235aa MW: 25701.8 Da PI: 5.1291

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.O00415.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	122.3	2e-38	60	152	2	94
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 r+ d+++Pian++rim++vlP++a i++dake +qe vsefisfvt+ea+ c+ + r+t++++d+l a+a+lG++dy+epl+++l+k+r + Migut.O00415.1.p 60 RDVDQYMPIANITRIMRRVLPSHAEIADDAKEAIQEYVSEFISFVTAEANWLCHCDYRRTVTPEDVLAAMASLGLDDYLEPLTLFLNKHRAEQ 152 788**************************************************************************************9754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.5E-37	55	156	IPR009072	Histone-fold
SuperFamily	SSF47113	9.19E-30	63	156	IPR009072	Histone-fold
Pfam	PF00808	1.2E-19	65	129	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.5E-11	93	111	No hit	No description
PRINTS	PR00615	1.5E-11	112	130	No hit	No description
PRINTS	PR00615	1.5E-11	131	149	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MEKGGCSNIE YKYTRRARTS GIVIREGGVA SAAASTNATN IPAAAPNTIG GQVNQQGFKR 60 DVDQYMPIAN ITRIMRRVLP SHAEIADDAK EAIQEYVSEF ISFVTAEANW LCHCDYRRTV 120 TPEDVLAAMA SLGLDDYLEP LTLFLNKHRA EQNSEQFVRQ GGDAGVRVGF IDKQQPPMAS 180 TMGYYVPLPP SAATTKEERD FGDLTPAIHE YILRNHGCGE GSSGGCEFDP FQKF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	6e-37	60	149	7	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.O00415.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012839441.1	1e-135	PREDICTED: nuclear transcription factor Y subunit B-3-like
TrEMBL	A0A022R583	1e-131	A0A022R583_ERYGU; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6044	4	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	9e-41	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	Migut.O00415.1.p