PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.O00948.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YB

Protein Properties

Length: 144aa MW: 16348.2 Da PI: 4.7735

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.O00948.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	141.3	2.5e-44	6	98	5	97
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 + lPianv+r+mkk+lP akis++ake +q+c+sefi fvt+ea+++cq+e+rkt+ngdd++wal++lGf++y e++ yl+++re+e+e+ Migut.O00948.1.p 6 ELSLPIANVGRMMKKILPPSAKISREAKERMQQCASEFICFVTGEAAHRCQKENRKTVNGDDICWALSSLGFDNYSEAMLRYLENFREFERER 98 5679**************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.1E-44	4	119	IPR009072	Histone-fold
SuperFamily	SSF47113	2.65E-35	6	128	IPR009072	Histone-fold
Pfam	PF00808	1.9E-24	8	72	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.9E-14	36	54	No hit	No description
PRINTS	PR00615	3.9E-14	55	73	No hit	No description
PRINTS	PR00615	3.9E-14	74	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MSDEIELSLP IANVGRMMKK ILPPSAKISR EAKERMQQCA SEFICFVTGE AAHRCQKENR 60 KTVNGDDICW ALSSLGFDNY SEAMLRYLEN FREFERERAN QNNYKANNNC IEEKDEETSY 120 EDITTSFDFG ILERGGASSA KHS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-34	9	93	8	92	Transcription factor HapC (Eurofung)
4g92_B	2e-34	9	93	8	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.O00948.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012850788.1	1e-104	PREDICTED: nuclear transcription factor Y subunit B-4-like
Swissprot	O04027	5e-47	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A022QI59	2e-82	A0A022QI59_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	8e-40	nuclear factor Y, subunit B4

Link Out ? help Back to Top
Phytozome	Migut.O00948.1.p

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]