PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_000148-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WOX
Protein Properties Length: 338aa    MW: 38499.8 Da    PI: 5.9499
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_000148-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.86.9e-2280139357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                    +R+++t+eql++Leel++  +r+p+ae++++++++l    +++ ++V++WFqN++a+e++
  NNU_000148-RA  80 SRWNPTPEQLRTLEELYRCgTRTPTAEQIQHITAQLrrfgKIEGKNVFYWFQNHKARERQ 139
                    7*****************99**************************************97 PP
2Wus_type_Homeobox115.62.4e-3779141365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+
      NNU_000148-RA  79 SSRWNPTPEQLRTLEELYRCGTRTPTAEQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKR 141
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.86775140IPR001356Homeobox domain
SMARTSM003892.1E-477144IPR001356Homeobox domain
PfamPF000461.4E-1980139IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-880139IPR009057Homeodomain-like
SuperFamilySSF466891.71E-1180142IPR009057Homeodomain-like
CDDcd000868.07E-481134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MWMMGCSDGS GFNMPDSFNS RKLRPLMPRL TTNSTNSAAG IAPCLSRIHG TDLFALNTHL  60
ATVNEQSKRE FISAQPVVSS RWNPTPEQLR TLEELYRCGT RTPTAEQIQH ITAQLRRFGK  120
IEGKNVFYWF QNHKARERQK RRRRAAEEQQ HCDTENLDRK ESGSSKTGFG IEQTRNWTWA  180
PPTLAEETVS MQRAAVAESR TDGWIQFEEG ELQQRSSSVE RHATWQMMQL SSSCPSTTLI  240
SNITTATTEI DPKLVNNRPL DIFKTTCSTE HLSTLLINGE DRNGEEECGE SQTLELFPLQ  300
SERNNGSDDA EKETEVANPT MNTNFTSYQF FEFLPMKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263000.10.0PREDICTED: WUSCHEL-related homeobox 1-like
TrEMBLA0A1U8AC780.0A0A1U8AC78_NELNU; WUSCHEL-related homeobox 1-like
STRINGXP_010263000.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.13e-44WUSCHEL related homeobox 1