PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_000160-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 610aa    MW: 66855.9 Da    PI: 5.3616
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_000160-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4631.7e-1412345971374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    lv++L++cAeav++++l++a+al++++  la +++ +m+++a+yf+eALa+r+++        l p+++ +  ss + + +  f+e++P+lkf+h+
  NNU_000160-RA 234 LVHTLMACAEAVQQNNLKMAEALVKQIGLLAVSQAGAMRKVATYFAEALARRIYQ--------LYPQDSLD--SSFSDMLQMHFYETCPYLKFAHF 319
                    689***************************************************9........55565554..4444445556************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    taNqaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+++++++l+++g++La++A++++v+fe++ +va++l+dl+ +
  NNU_000160-RA 320 TANQAILEAFAGKSRVHVIDFSMKQGMQWPALMQALALRPGGPPTFRLTGIGPPQQDNTDALQQVGWKLAQLAKSIHVKFEYRGFVANSLADLDAS 415
                    ************************************************************************************************ PP

           GRAS 193 eLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikv 285
                    +L+++p  +Ea+aVn+v++lhrll++++++e+    vL+ +k+++Pk+v++veqea+hn++ Fl+rf+eal+yys+lfdsl    +++ +++++++
  NNU_000160-RA 416 MLDLRPseDEAVAVNSVFELHRLLARPGAIEK----VLSSIKEMKPKIVTIVEQEANHNGPVFLDRFTEALHYYSTLFDSLeGCAMSPPNSQDQVM 507
                    *****999************************....*********************************************777899999****** PP

           GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    ++ +lgr+i+nvvaceg +r+erhe l +Wr+rl+++GF+pv+l+ +a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  NNU_000160-RA 508 SELYLGRQICNVVACEGVDRVERHEALTQWRNRLGSSGFSPVHLGFNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLIATSAWQ 597
                    *****************************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.1E-3737110No hitNo description
PfamPF120412.1E-3637104IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098567.981208576IPR005202Transcription factor GRAS
PfamPF035145.9E-139234597IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MKRELQESTS GGGVYSMAEA GKCKMWDEAE QQDAGVDELL AVLGYKVRSS DMAEVAQKLE  60
QLDIVMGSAQ EDGLNHLASE TVHYNPSDLA TWLESMLSEL NAPPIFDPTP SQPSLPRVLD  120
DPRLAPAESS SMVTIDFPNS RQQQQQPKQQ IHPQQPRIYD EPTDYDLRAI PGGAICGQVE  180
PASKRMKPTS TSTSASSSSS PSAAPAAVGV TSGVSTELAR PVVLVDSQET GVRLVHTLMA  240
CAEAVQQNNL KMAEALVKQI GLLAVSQAGA MRKVATYFAE ALARRIYQLY PQDSLDSSFS  300
DMLQMHFYET CPYLKFAHFT ANQAILEAFA GKSRVHVIDF SMKQGMQWPA LMQALALRPG  360
GPPTFRLTGI GPPQQDNTDA LQQVGWKLAQ LAKSIHVKFE YRGFVANSLA DLDASMLDLR  420
PSEDEAVAVN SVFELHRLLA RPGAIEKVLS SIKEMKPKIV TIVEQEANHN GPVFLDRFTE  480
ALHYYSTLFD SLEGCAMSPP NSQDQVMSEL YLGRQICNVV ACEGVDRVER HEALTQWRNR  540
LGSSGFSPVH LGFNAFKQAS MLLALFAGGD GYRVEENNGC LMLGWHTRPL IATSAWQLAS  600
DRHLRLAACL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6722959614378Protein SCARECROW
5b3h_A2e-6722959613377Protein SCARECROW
5b3h_D2e-6722959613377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264458.10.0PREDICTED: DELLA protein GAI1
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A1U8APB60.0A0A1U8APB6_NELNU; DELLA protein GAI1
STRINGXP_010264458.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein