PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_000255-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HSF

Protein Properties

Length: 369aa MW: 41619.1 Da PI: 4.8265

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_000255-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.4	3.1e-35	15	106	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl+k y+++ed++++ ++sws+n+++f+++d + f++++LpkyFkhsnf+SF+RQLn+YgF+k + ++ weF+++ F kg+++ll++i NNU_000255-RA 15 FLTKCYDMVEDPATDPIVSWSSNNDTFIIWDVTAFSRDLLPKYFKHSNFSSFIRQLNTYGFRKADPDR---------WEFANEGFIKGQRHLLKNI 101 9*************************************************************9999.........*************** PP XXXXX CS HSF_DNA-bind 98 krkks 102 rkk+ NNU_000255-RA 102 SRKKH 106 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.2E-37	5	99	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.58E-34	10	104	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	8.5E-59	11	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.6E-30	15	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.7E-19	15	38	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.7E-19	53	65	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.7E-19	66	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MEESSSSKAS SVPPFLTKCY DMVEDPATDP IVSWSSNNDT FIIWDVTAFS RDLLPKYFKH 60 SNFSSFIRQL NTYGFRKADP DRWEFANEGF IKGQRHLLKN ISRKKHVQGP GQQKEAQQKM 120 PVGACVEVGK FGLQVEVESL KRDKNVLMQE LVKLRQQQQA AENKLLGLRK SLQRMEKAQQ 180 QMLSFLAMAM QSPGFLEQLL QQNENNWRMA GASKKRRLPA LEQGFEGGEA EVSKGQIVMY 240 QPPKNNTSKP LVMTVLNTDV SPKVDVNDFV RNDSMESPTG EGLHSLENDA QIIISGLLSD 300 DLLEQLLVDS PFTENLVETE LDAPESMNTG MDMDAVVHDC QLETSQNMDL LTEQMSLLAS 360 ETNSRHEIL

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MEESSSSKAS SVPPFLTKCY DMVEDPATDP IVSWSSNNDT FIIWDVTAFS RDLLPKYFKH  60
SNFSSFIRQL NTYGFRKADP DRWEFANEGF IKGQRHLLKN ISRKKHVQGP GQQKEAQQKM  120
PVGACVEVGK FGLQVEVESL KRDKNVLMQE LVKLRQQQQA AENKLLGLRK SLQRMEKAQQ  180
QMLSFLAMAM QSPGFLEQLL QQNENNWRMA GASKKRRLPA LEQGFEGGEA EVSKGQIVMY  240
QPPKNNTSKP LVMTVLNTDV SPKVDVNDFV RNDSMESPTG EGLHSLENDA QIIISGLLSD  300
DLLEQLLVDS PFTENLVETE LDAPESMNTG MDMDAVVHDC QLETSQNMDL LTEQMSLLAS  360
ETNSRHEIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	6e-26	5	104	19	129	Heat shock factor protein 1
5d5v_B	6e-26	5	104	19	129	Heat shock factor protein 1
5d5v_D	6e-26	5	104	19	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010277544.1	0.0	PREDICTED: heat stress transcription factor A-1-like isoform X2
Swissprot	Q84T61	1e-103	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A1U8BK47	0.0	A0A1U8BK47_NELNU; heat stress transcription factor A-1-like isoform X2
STRING	XP_010277469.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17750.1	1e-100	heat shock factor 1

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]