PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_000404-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

TCP

Protein Properties

Length: 255aa MW: 26423.7 Da PI: 10.1439

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_000404-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.1	6.3e-38	31	111	2	83
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ a+s s+ +s NNU_000404-RA 31 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-AVSVSVRGS 111 789******************************************************************777.222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.9E-33	37	125	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	37	91	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MSTTDGATNG ATNGALMDPQ RQQPPGNGAL AVKKPPAKDR HSKVDGRGRR IRMPIICAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSAVSVSVRG SSGTSVSASL 120 DQKPTPPMLG PTPFILGKRL RTDDDADDGA KDDATAAAAA VAVGPTGGFW ALPARPDFGQ 180 VWSFAATPEM VVPTPAAVAV ASQQSMTGRF PQQPIGEASA ARVGNYLPIA QGHLNLLASL 240 SGAPASSVRR DDEHR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010249637.1	0.0	PREDICTED: transcription factor TCP7
Swissprot	Q9FMX2	2e-91	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1U7Z8A1	0.0	A0A1U7Z8A1_NELNU; transcription factor TCP7
STRING	XP_010249637.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	6e-54	TCP family protein