PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_000460-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C3H

Protein Properties

Length: 783aa MW: 87157.9 Da PI: 4.8675

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_000460-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.6e-06	120	141	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C ff++ G C GdrC+F+Hgp NNU_000460-RA 120 PCFFFQK-GLCLKGDRCPFMHGP 141 6777777.*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.098	20	49	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0095	20	48	IPR000571	Zinc finger, CCCH-type
Pfam	PF15663	8.6E-12	21	75	No hit	No description
PROSITE profile	PS50103	11.263	51	77	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.21	53	76	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.554	115	142	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.3E-5	115	141	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.93E-6	117	140	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.9E-5	117	142	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	0.46	120	140	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 783 aa Download sequence Send to blast
MEAATRDSSQ LPVAAEEESL KKNTDCVYFL ASPLTCKKGS ECEYRHSEPA RINPRDCWFW 60 LNGNCLNPKC SFRHPPLDGF LGTQGASSVG SSLSPQAGIS TQMPPAFTAP AHGSGKQPTP 120 CFFFQKGLCL KGDRCPFMHG PQPLAPKVAP TVTEPQISKK TSFGGLEKCT TQQQNIPKQN 180 TINQIEVPPP EKSVMKTETA LPKNGIAAKK NVQSDDEQLR YKPANIPAFS GSSVSRPVNA 240 PGTGGNSLSR PANAPGASGN SVSRPHCSRQ AQVLDDRSFQ NGKEGDEILG ESSPGFDVLV 300 DNELRNSHYY QNVDEYGSAT DHDGRNLNSA GEFDYGCSVD YDSVNKFDQE PYIDSRGYDP 360 YGRAQDHYPW EQHRASSVSE RLSLPDKRGY PRGKSPDQIG ESDLRHRLSK QRRLNGSRSI 420 ISSNCRDDGH RRNDHEHHFE DQRNQDRSWR ETSNLPRENS ISNRLQGRIT LPGRSSSPDS 480 NNSSLRPERE MNRGRSWGRS SPPGRGPISS YQGRHQDRIK RRGQEDDNIE GRNFRAPLAR 540 RDDIVSTLDF AGPKSLAELK GSKHLESTED QEKDQETKAR QVFPCREQQN SKIGKLVAQE 600 SEDSLSFEGP KPLSVLLKRK REAETTSGNI KISDIGEESS PRSENFMGGS RMTAITETQS 660 DLPSERKKED DENIVSNQEK SKSSAATVED DEEGQIFPED NEVAHEDEPY AQDGTEFEAE 720 DATMLDDTFE DQELETFDQR GGESDYEQTG GQDKTEDENL DPEEYLDDED GDDFAKRIGV 780 MFS

Sequence ? help Back to Top

Protein Sequence Length: 783 aa Download sequence Send to blast

MEAATRDSSQ LPVAAEEESL KKNTDCVYFL ASPLTCKKGS ECEYRHSEPA RINPRDCWFW  60
LNGNCLNPKC SFRHPPLDGF LGTQGASSVG SSLSPQAGIS TQMPPAFTAP AHGSGKQPTP  120
CFFFQKGLCL KGDRCPFMHG PQPLAPKVAP TVTEPQISKK TSFGGLEKCT TQQQNIPKQN  180
TINQIEVPPP EKSVMKTETA LPKNGIAAKK NVQSDDEQLR YKPANIPAFS GSSVSRPVNA  240
PGTGGNSLSR PANAPGASGN SVSRPHCSRQ AQVLDDRSFQ NGKEGDEILG ESSPGFDVLV  300
DNELRNSHYY QNVDEYGSAT DHDGRNLNSA GEFDYGCSVD YDSVNKFDQE PYIDSRGYDP  360
YGRAQDHYPW EQHRASSVSE RLSLPDKRGY PRGKSPDQIG ESDLRHRLSK QRRLNGSRSI  420
ISSNCRDDGH RRNDHEHHFE DQRNQDRSWR ETSNLPRENS ISNRLQGRIT LPGRSSSPDS  480
NNSSLRPERE MNRGRSWGRS SPPGRGPISS YQGRHQDRIK RRGQEDDNIE GRNFRAPLAR  540
RDDIVSTLDF AGPKSLAELK GSKHLESTED QEKDQETKAR QVFPCREQQN SKIGKLVAQE  600
SEDSLSFEGP KPLSVLLKRK REAETTSGNI KISDIGEESS PRSENFMGGS RMTAITETQS  660
DLPSERKKED DENIVSNQEK SKSSAATVED DEEGQIFPED NEVAHEDEPY AQDGTEFEAE  720
DATMLDDTFE DQELETFDQR GGESDYEQTG GQDKTEDENL DPEEYLDDED GDDFAKRIGV  780
MFS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010250625.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBL	A0A1U7ZAT2	0.0	A0A1U7ZAT2_NELNU; zinc finger CCCH domain-containing protein 17
STRING	XP_010250625.1	0.0	(Nelumbo nucifera)