PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_000498-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 362aa    MW: 40090.2 Da    PI: 6.6094
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_000498-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.93.5e-32110214199
                    EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                    f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l++ed+sg+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + 
  NNU_000498-RA 110 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSAANEKGLLLSFEDRSGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFERGvGEsGRN 205
                    89***************************955556889*************************************************665777888 PP

                    ..EEEEE-S CS
             B3  91 elvvkvfrk 99 
                    +l++ ++r+
  NNU_000498-RA 206 RLYIDWRRR 214
                    999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-41105218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-30107216IPR015300DNA-binding pseudobarrel domain
CDDcd100172.65E-27108204No hitNo description
PROSITE profilePS5086315.016110215IPR003340B3 DNA binding domain
PfamPF023621.4E-29110214IPR003340B3 DNA binding domain
SMARTSM010197.6E-24110215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAGFVLEPRK QPMNFEPMGQ PSGSMGTELL KSGDAADYYF NLEEEAGRSY DRPAAAPLEF  60
HGQEAVTNFN RKLELIDLST RRSDDISRGE SDGGGSSSGG GGCVEREHMF DKVVTPSDVG  120
KLNRLVIPKQ HAEKYFPLDS AANEKGLLLS FEDRSGKPWR FRYSYWNSSQ SYVMTKGWSR  180
FVKEKKLDAG DIVSFERGVG ESGRNRLYID WRRRPDAPDP AILPPLPFSH PLSLPRSVPW  240
GHGRLFLPTT PTGVDEPMVF DSVPVVHGKA AAKRVRLFGV NLDCPISEDP EFHALSSSPT  300
IQHTTTTMDS LSPQHPTPPL QLRLYSGAPL PTVPPELPKN GKQPIYANIQ LVLSQECDKD  360
LG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-651052153114B3 domain-containing transcription factor NGA1
5os9_B1e-651052153114B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251300.11e-136PREDICTED: B3 domain-containing protein Os03g0120900-like
SwissprotQ8LMR92e-75Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A1U7ZEQ21e-134A0A1U7ZEQ2_NELNU; B3 domain-containing protein Os03g0120900-like
STRINGXP_010251300.11e-135(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-59B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]