PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_000503-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 428aa MW: 48027 Da PI: 6.459

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_000503-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.6	2.2e-13	216	267	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++ + a+i A++++k+L+ NNU_000503-RA 216 QRMTHIAVERNRRRQMNDHLNALRSLMPTS---FIQRGDQASIIGGAIDFVKELE 267 79*************************9...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-16	206	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.94E-13	214	271	No hit	No description
PROSITE profile	PS50888	15.586	215	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-14	216	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.2E-11	216	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-11	221	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MEKLQGPINP CGEKAFDFTH GSSLISTESF RLEEERKPFA IPSLQDKMPF LQMLQSVESP 60 TFTSLIEPSF QLLLRLQQQK PWGRNNWTEV DPCAQTLEPE SCITHDISEA YSPVKSETKI 120 THDISEAHST VKSETKEPHH PQSSSCLEVV SSACNVGPNS PENCGAENSG TPSNRVDDRL 180 MVKSSPQLTM PAPVTREKRK RKRTRPSKNK EEVETQRMTH IAVERNRRRQ MNDHLNALRS 240 LMPTSFIQRG DQASIIGGAI DFVKELEQLL QSLQAQKRIR KTEEEGNGDN SENHHNHRDP 300 DSSALPFNGF FISPQYTTYS SLASSDIKYT GEEEFTAENK SAVADIEVIV IHTHVNLKIL 360 SARRPGQLLK VIAALEDLRL TILHLNITSS QRSVLYSFNL KMEDDCKLGS ADEIAAAVHQ 420 VFSLINGQ

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MEKLQGPINP CGEKAFDFTH GSSLISTESF RLEEERKPFA IPSLQDKMPF LQMLQSVESP  60
TFTSLIEPSF QLLLRLQQQK PWGRNNWTEV DPCAQTLEPE SCITHDISEA YSPVKSETKI  120
THDISEAHST VKSETKEPHH PQSSSCLEVV SSACNVGPNS PENCGAENSG TPSNRVDDRL  180
MVKSSPQLTM PAPVTREKRK RKRTRPSKNK EEVETQRMTH IAVERNRRRQ MNDHLNALRS  240
LMPTSFIQRG DQASIIGGAI DFVKELEQLL QSLQAQKRIR KTEEEGNGDN SENHHNHRDP  300
DSSALPFNGF FISPQYTTYS SLASSDIKYT GEEEFTAENK SAVADIEVIV IHTHVNLKIL  360
SARRPGQLLK VIAALEDLRL TILHLNITSS QRSVLYSFNL KMEDDCKLGS ADEIAAAVHQ  420
VFSLINGQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	216	227	RMTHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010251348.1	0.0	PREDICTED: transcription factor bHLH67-like
TrEMBL	A0A1U7ZCN7	0.0	A0A1U7ZCN7_NELNU; transcription factor bHLH67-like
STRING	XP_010251348.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	1e-71	bHLH family protein